Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G551800.3 | Wheat | nucleus | 95.5 | 95.5 |
| TraesCS4A01G321300.1 | Wheat | nucleus | 91.87 | 93.32 |
| HORVU5Hr1G124010.1 | Barley | nucleus | 89.1 | 88.95 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 68.34 | 68.46 |
| Os03t0854800-03 | Rice | nucleus | 54.5 | 53.94 |
| EER90487 | Sorghum | nucleus | 51.9 | 52.36 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 52.08 | 45.88 |
| GSMUA_Achr11P... | Banana | nucleus | 40.66 | 45.19 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 40.83 | 41.7 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 39.62 | 41.64 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 41.35 | 41.57 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 29.24 | 40.33 |
| TraesCS1B01G210300.4 | Wheat | peroxisome | 38.24 | 37.52 |
| CDY60257 | Canola | cytosol | 19.2 | 33.95 |
| Solyc08g005270.2.1 | Tomato | nucleus | 33.56 | 32.33 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 29.24 | 31.71 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 33.74 | 31.3 |
| Bra023252.1-P | Field mustard | nucleus | 25.09 | 30.08 |
| CDY22597 | Canola | nucleus | 27.51 | 29.23 |
| PGSC0003DMT400038368 | Potato | nucleus | 29.76 | 29.2 |
| CDY67026 | Canola | nucleus | 27.68 | 29.09 |
| Bra017317.1-P | Field mustard | nucleus | 26.64 | 29.06 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 26.12 | 28.82 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 29.07 | 28.82 |
| Solyc08g076420.2.1 | Tomato | nucleus | 29.76 | 28.81 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 24.57 | 28.8 |
| CDY31694 | Canola | nucleus | 25.95 | 28.41 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 28.55 | 28.3 |
| CDY32124 | Canola | nucleus | 25.95 | 28.3 |
| AT1G32230.1 | Thale cress | nucleus | 28.2 | 27.67 |
| Bra035511.1-P | Field mustard | cytosol | 26.3 | 27.24 |
| AT2G35510.3 | Thale cress | cytosol | 26.47 | 26.94 |
| CDY43007 | Canola | nucleus | 26.99 | 26.85 |
| Solyc06g066330.2.1 | Tomato | nucleus | 26.82 | 26.09 |
| PGSC0003DMT400043197 | Potato | nucleus | 26.82 | 26.09 |
| CDY41739 | Canola | cytosol | 23.7 | 24.91 |
| TraesCS4B01G235000.1 | Wheat | nucleus | 18.86 | 24.83 |
| KRH74373 | Soybean | mitochondrion | 16.78 | 20.34 |
| TraesCS7B01G309100.1 | Wheat | nucleus | 22.32 | 14.79 |
| TraesCS7B01G105400.1 | Wheat | nucleus | 20.42 | 12.1 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G557500.2 | EnsemblPlantsGene:TraesCS5B01G557500 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 |
| GO:GO:0016740 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF4 |
| PFAM:PF12174 | PFscan:PS51059 | SEG:seg | SUPFAM:SSF56399 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr5B:-:705276928..705279657
Molecular Weight (calculated)
63866.5 Da
IEP (calculated)
8.528
GRAVY (calculated)
-0.426
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MERKTGMVLD EHVLKATDRK RKHESSVKST GTDDFAEVSQ HADGSAVLKK SKMTSSAGDI LECYKNFKTS GSPVRVLCYH QGKWRDFPEH VVNLVQQDFQ
101: LKRPITNAVL KNQQVLLDFM HMVCIDSSMT TNKPIAWIDV HGNRFFPELC AGLVTSKPSQ HGKSDPSGKS KAGECAGTLI LTAEAESSSS DSVDAVLPHA
201: KKVNNILEEG QEVHNYAAVE NKAGPAICLN EPASGNIHAA TYKQKIGQPV DSAVRKLLLE GAGQPFSEEN IIGIYRTPLV DQQGRARFNL FQKELEATKM
301: HRGNANVRYA WLPCSKDTME EMMMRGVLEV TKPMLGPVYG IGTHLAPANC AQTCASYSDI DENGIMRMML CRVIMGNVEV VLPGSKQFQP TNERFDSGVD
401: DLQKPKHYII WDANVHRHIY AEYAVVIKAP SMTNEYLARE DTASNISEIR NSGSAESVIK DDSSETMASP ADKQQAPRFG RAPTRRPPTS PWMPLPMLFA
501: AISTKVPRSD MDVIHGHYEE FKRRKISRPE FVRRLRQIFG DKLLVSTVMR LQPKVVAPMA GAEVLPRGAP GTGGSSTS
101: LKRPITNAVL KNQQVLLDFM HMVCIDSSMT TNKPIAWIDV HGNRFFPELC AGLVTSKPSQ HGKSDPSGKS KAGECAGTLI LTAEAESSSS DSVDAVLPHA
201: KKVNNILEEG QEVHNYAAVE NKAGPAICLN EPASGNIHAA TYKQKIGQPV DSAVRKLLLE GAGQPFSEEN IIGIYRTPLV DQQGRARFNL FQKELEATKM
301: HRGNANVRYA WLPCSKDTME EMMMRGVLEV TKPMLGPVYG IGTHLAPANC AQTCASYSDI DENGIMRMML CRVIMGNVEV VLPGSKQFQP TNERFDSGVD
401: DLQKPKHYII WDANVHRHIY AEYAVVIKAP SMTNEYLARE DTASNISEIR NSGSAESVIK DDSSETMASP ADKQQAPRFG RAPTRRPPTS PWMPLPMLFA
501: AISTKVPRSD MDVIHGHYEE FKRRKISRPE FVRRLRQIFG DKLLVSTVMR LQPKVVAPMA GAEVLPRGAP GTGGSSTS
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQPK SKEIPGSIRD HEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQPK SKEIPGSIRD HEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.