Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G057900.1 | Wheat | nucleus | 95.73 | 95.73 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 95.44 | 95.44 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 89.46 | 89.46 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 52.99 | 47.09 |
| Zm00001d014455_P001 | Maize | nucleus | 44.73 | 45.24 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 40.17 | 45.05 |
| EER90227 | Sorghum | nucleus | 47.01 | 44.12 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 9.97 | 32.71 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 9.69 | 31.78 |
| Bra038312.1-P | Field mustard | nucleus | 9.4 | 30.84 |
| CDY44060 | Canola | nucleus | 9.4 | 30.84 |
| KRG89501 | Soybean | nucleus | 28.77 | 29.71 |
| KRH50535 | Soybean | nucleus | 27.92 | 29.52 |
| AT1G69325.1 | Thale cress | nucleus | 9.97 | 29.17 |
| KRH70859 | Soybean | nucleus | 21.37 | 28.2 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 24.22 | 27.69 |
| CDY36418 | Canola | nucleus | 24.79 | 26.93 |
| Bra019698.1-P | Field mustard | nucleus | 24.22 | 26.23 |
| Bra016720.1-P | Field mustard | nucleus | 25.36 | 26.1 |
| CDX96876 | Canola | nucleus | 25.36 | 26.02 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 27.35 | 25.46 |
| CDX98136 | Canola | nucleus | 23.36 | 25.31 |
| CDY34554 | Canola | nucleus | 24.5 | 25.15 |
| KRH74999 | Soybean | nucleus | 18.8 | 24.81 |
| Solyc05g012550.2.1 | Tomato | nucleus | 26.78 | 24.42 |
| Solyc04g005470.2.1 | Tomato | nucleus | 21.08 | 23.49 |
| AT1G13920.4 | Thale cress | nucleus | 23.93 | 22.22 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 12.54 | 21.15 |
| Solyc06g069590.2.1 | Tomato | cytosol | 11.68 | 20.92 |
| KRH63271 | Soybean | cytosol | 8.83 | 19.02 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 11.11 | 17.18 |
| KRH03090 | Soybean | nucleus | 10.83 | 14.96 |
| KRH56866 | Soybean | nucleus | 11.11 | 14.72 |
| AT5G61280.1 | Thale cress | nucleus | 10.54 | 14.07 |
| KRH54632 | Soybean | nucleus | 10.26 | 13.85 |
| CDY23073 | Canola | nucleus | 13.11 | 7.06 |
| Bra012972.1-P | Field mustard | nucleus | 11.11 | 5.82 |
| CDY02159 | Canola | extracellular, golgi | 9.69 | 4.67 |
| AT5G61270.1 | Thale cress | nucleus | 2.28 | 2.19 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G058700.1 | EnsemblPlantsGene:TraesCS1D01G058700 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF8 |
| PFAM:PF03763 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1D:-:38657471..38659114
Molecular Weight (calculated)
39136.1 Da
IEP (calculated)
10.364
GRAVY (calculated)
-1.193
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAGMRQSRV RFSGVGQEDQ GSGQAMAMPP QRQRGTPFGR GEEYDAAYAA TVAAVAYAIA AMEEEKLPPQ QKPIPEKTAS RQKRVTVHEP TAAPPPRSPP
101: RRGGSMKRPT EGSKISRLFS GNKEIVEVGD EDEQGANVSV RRPVKPTPKK PGGPTPGQNV VGKVADSIPN LKDDPSFARK TPDKKRSRNF EQEEANWKAK
201: PEVNPTTSFP EERKRSWKHE QEPANQRAPP AARPPGMVYS SEAERMAAAW EKEELAKIKE RYNETMETIA EWETEKKAKA RRQKEPKEGD SERKRAKALE
301: EYNDEMKRIS KVAAASRMSA EDKKRNAEGK VWEKAAKIRS TGKLPRSCGC F
101: RRGGSMKRPT EGSKISRLFS GNKEIVEVGD EDEQGANVSV RRPVKPTPKK PGGPTPGQNV VGKVADSIPN LKDDPSFARK TPDKKRSRNF EQEEANWKAK
201: PEVNPTTSFP EERKRSWKHE QEPANQRAPP AARPPGMVYS SEAERMAAAW EKEELAKIKE RYNETMETIA EWETEKKAKA RRQKEPKEGD SERKRAKALE
301: EYNDEMKRIS KVAAASRMSA EDKKRNAEGK VWEKAAKIRS TGKLPRSCGC F
001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.