Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61270.1 | EER90487 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | KXG38822 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014455_P001 | Maize | nucleus | 67.91 | 73.2 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 44.92 | 47.86 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 44.92 | 47.86 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 44.65 | 47.58 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 44.12 | 47.01 |
| OQU75583 | Sorghum | cytosol | 32.62 | 43.57 |
| KXG39897 | Sorghum | cytosol | 36.9 | 43.26 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 42.78 | 40.51 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 9.36 | 32.71 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 8.82 | 30.84 |
| AT1G69325.1 | Thale cress | nucleus | 9.63 | 30.0 |
| Bra038312.1-P | Field mustard | nucleus | 8.02 | 28.04 |
| CDY44060 | Canola | nucleus | 8.02 | 28.04 |
| KRG89501 | Soybean | nucleus | 25.13 | 27.65 |
| KRH50535 | Soybean | nucleus | 24.33 | 27.41 |
| CDX98136 | Canola | nucleus | 22.99 | 26.54 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 21.66 | 26.38 |
| KRH70859 | Soybean | nucleus | 18.72 | 26.32 |
| Bra019698.1-P | Field mustard | nucleus | 22.73 | 26.23 |
| CDY36418 | Canola | nucleus | 22.19 | 25.7 |
| Bra016720.1-P | Field mustard | nucleus | 22.99 | 25.22 |
| CDX96876 | Canola | nucleus | 22.73 | 24.85 |
| KRH74999 | Soybean | nucleus | 17.38 | 24.44 |
| CDY34554 | Canola | nucleus | 21.66 | 23.68 |
| Solyc05g012550.2.1 | Tomato | nucleus | 24.06 | 23.38 |
| AT1G13920.4 | Thale cress | nucleus | 22.99 | 22.75 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 22.73 | 22.55 |
| Solyc04g005470.2.1 | Tomato | nucleus | 17.65 | 20.95 |
| Solyc06g069590.2.1 | Tomato | cytosol | 10.7 | 20.41 |
| KRH63271 | Soybean | cytosol | 8.29 | 19.02 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 10.43 | 18.75 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 10.96 | 18.06 |
| AT5G61280.1 | Thale cress | nucleus | 10.16 | 14.45 |
| KRH03090 | Soybean | nucleus | 9.36 | 13.78 |
| KRH56866 | Soybean | nucleus | 9.36 | 13.21 |
| KRH54632 | Soybean | nucleus | 9.09 | 13.08 |
| CDY23073 | Canola | nucleus | 12.83 | 7.36 |
| Bra012972.1-P | Field mustard | nucleus | 10.43 | 5.82 |
| CDY02159 | Canola | extracellular, golgi | 9.36 | 4.81 |
| AT5G61270.1 | Thale cress | nucleus | 1.87 | 1.91 |
Protein Annotations
| EnsemblPlants:EER90227 | EnsemblPlantsGene:SORBI_3010G231200 | EntrezGene:8061621 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF8 | PFAM:PF03763 | ProteinID:EER90227 | ProteinID:EER90227.1 | RefSeq:XP_002438860.1 | SEG:seg |
| UniParc:UPI0001A89665 | UniProt:C5Z853 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:57415414..57417437
Molecular Weight (calculated)
41246.7 Da
IEP (calculated)
10.213
GRAVY (calculated)
-1.139
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDDLKHLRV SFSGVRQEDR GRRGGETIPT PSFQQRTSSR RGSLSNAEEY DAAYAATVAA VAYAIAAREE ERLLASQESP SPYAAADKLS RGNGNKQQRT
101: AAAADSMDEL ARTTTPQSSK SPRTPKRGES LKKPIFEGGR SSSSRWFTGK EPIDDDYQDE QANVSVKRIR LPVHRKPAQG AVSDERPPVY TDPAPRVKKD
201: PSFTRKPSEK RGSRRFEQDQ GNQTAPARPM DKTSSSYSAG GRESGGAATA TTSSGGGVAA FSSENEAMAD AWEKEKLAKI KKQYNETMQT IAEWETEKKA
301: KAKRQKELKD ESESDRKRAK ALEEYNEEMS RINKVAAASR LTAEDKRRSA ERKVRDKAHT IRSTGKLPGT CGCF
101: AAAADSMDEL ARTTTPQSSK SPRTPKRGES LKKPIFEGGR SSSSRWFTGK EPIDDDYQDE QANVSVKRIR LPVHRKPAQG AVSDERPPVY TDPAPRVKKD
201: PSFTRKPSEK RGSRRFEQDQ GNQTAPARPM DKTSSSYSAG GRESGGAATA TTSSGGGVAA FSSENEAMAD AWEKEKLAKI KKQYNETMQT IAEWETEKKA
301: KAKRQKELKD ESESDRKRAK ALEEYNEEMS RINKVAAASR LTAEDKRRSA ERKVRDKAHT IRSTGKLPGT CGCF
001: MDTLIKQTRR KHPASQEKIR EVGSSTREKK VSARKSVSFK EDKKKPSNWL QKQFSRQMSG QSYDPIGEMD HAAAVAATAY AIATFEETWL ENYHSGLELG
101: PSSSRSKSRS EELLPLEEPR SLSRRFSGQL SFIDSETKDH KPPTLKSPMR KSSSVKKTFS MNLMGDHTKQ NQDSEEKHER QRKPVSEPPR IQPPLRTRSE
201: PRAPPPPPPP LLSPSPLRLP PRETKRQSSE HTSRKDDSTA DAWEKAELSK IKARYEKLNR KIDLWEAKKR EKARRKLDIS EQSELEQRRK RGLQRFREDT
301: EYIEQIAAGA RAQAEKDRQS KEFKVKEKAG VIRSTGKLPG NACCF
101: PSSSRSKSRS EELLPLEEPR SLSRRFSGQL SFIDSETKDH KPPTLKSPMR KSSSVKKTFS MNLMGDHTKQ NQDSEEKHER QRKPVSEPPR IQPPLRTRSE
201: PRAPPPPPPP LLSPSPLRLP PRETKRQSSE HTSRKDDSTA DAWEKAELSK IKARYEKLNR KIDLWEAKKR EKARRKLDIS EQSELEQRRK RGLQRFREDT
301: EYIEQIAAGA RAQAEKDRQS KEFKVKEKAG VIRSTGKLPG NACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.