Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012821_P003 | |
| Zm00001d014423_P002 | |
| Zm00001d030110_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61270.1 | Zm00001d012821_P003 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | Zm00001d014423_P002 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | Zm00001d030110_P001 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER90227 | Sorghum | nucleus | 73.2 | 67.91 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 46.11 | 45.58 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 45.82 | 45.3 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 45.82 | 45.3 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 45.24 | 44.73 |
| Zm00001d015411_P001 | Maize | nucleus | 21.33 | 43.02 |
| Zm00001d028185_P002 | Maize | cytosol | 38.62 | 41.49 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 43.23 | 37.97 |
| Zm00001d048109_P002 | Maize | mitochondrion | 36.6 | 35.47 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 9.8 | 31.78 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 9.22 | 29.91 |
| CDX98136 | Canola | nucleus | 26.22 | 28.09 |
| Bra019698.1-P | Field mustard | nucleus | 25.94 | 27.78 |
| KRH50535 | Soybean | nucleus | 26.51 | 27.71 |
| CDY36418 | Canola | nucleus | 25.65 | 27.55 |
| AT1G69325.1 | Thale cress | nucleus | 9.51 | 27.5 |
| CDY44060 | Canola | nucleus | 8.36 | 27.1 |
| Bra038312.1-P | Field mustard | nucleus | 8.36 | 27.1 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 23.92 | 27.04 |
| KRG89501 | Soybean | nucleus | 25.65 | 26.18 |
| KRH70859 | Soybean | nucleus | 19.88 | 25.94 |
| KRH74999 | Soybean | nucleus | 19.02 | 24.81 |
| Bra016720.1-P | Field mustard | nucleus | 24.21 | 24.63 |
| CDX96876 | Canola | nucleus | 23.63 | 23.98 |
| AT1G13920.4 | Thale cress | nucleus | 25.07 | 23.02 |
| CDY34554 | Canola | nucleus | 21.33 | 21.64 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 23.05 | 21.22 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 12.68 | 21.15 |
| Solyc05g012550.2.1 | Tomato | nucleus | 22.77 | 20.52 |
| Solyc04g005470.2.1 | Tomato | nucleus | 17.29 | 19.05 |
| Solyc06g069590.2.1 | Tomato | cytosol | 10.66 | 18.88 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 11.82 | 18.06 |
| KRH63271 | Soybean | cytosol | 7.2 | 15.34 |
| AT5G61280.1 | Thale cress | nucleus | 10.66 | 14.07 |
| KRH03090 | Soybean | nucleus | 10.09 | 13.78 |
| KRH56866 | Soybean | nucleus | 10.37 | 13.58 |
| KRH54632 | Soybean | nucleus | 8.65 | 11.54 |
| CDY23073 | Canola | nucleus | 12.97 | 6.9 |
| Bra012972.1-P | Field mustard | nucleus | 11.24 | 5.82 |
| CDY02159 | Canola | extracellular, golgi | 10.09 | 4.81 |
| AT5G61270.1 | Thale cress | nucleus | 2.02 | 1.91 |
Protein Annotations
| EMBL:BT035936 | EnsemblPlants:Zm00001d014455_P001 | EnsemblPlants:Zm00001d014455_T001 | EnsemblPlantsGene:Zm00001d014455 | EntrezGene:100193618 | InterPro:Remorin_C |
| ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF8 | PFAM:PF03763 | ProteinID:AQK66313.1 | SEG:seg |
| UniParc:UPI00017B72E0 | UniProt:B4FFP8 | MapMan:35.2 | : | : | : |
Description
Remorin family protein
Coordinates
chr5:-:48031606..48033356
Molecular Weight (calculated)
38164.1 Da
IEP (calculated)
10.354
GRAVY (calculated)
-1.101
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDDLKHLRV SFSGVRQGGE TVPLPSQRRT SSRRASDAAE EYDAAYAATV AAVAYAIAAR EERLSASQES TPYAAADRLA RGNKQSSKSA RTTKRGESLE
101: KPNFEGRRSS SSRWFTGKEP IDDDYQDEQA NVSVKRPLRP AQKKPAPAEG AASDERLPAL ADPALRVRKD FSFTRKPSEK RGSRRFEQDQ GNQTTAPPPP
201: PPTARPSDKA SSSYSAAGSR DSGAATTSGG PMAFSSENEA MADAWEKEKL ARIKRKYNET MQTIAAWEAE KKANARRQKQ LKDESESERK RAKALEEYTE
301: EMSRINKVAA ASRLTAEEKK RSAERKARDK AHTIRSTGKL PGACGCF
101: KPNFEGRRSS SSRWFTGKEP IDDDYQDEQA NVSVKRPLRP AQKKPAPAEG AASDERLPAL ADPALRVRKD FSFTRKPSEK RGSRRFEQDQ GNQTTAPPPP
201: PPTARPSDKA SSSYSAAGSR DSGAATTSGG PMAFSSENEA MADAWEKEKL ARIKRKYNET MQTIAAWEAE KKANARRQKQ LKDESESERK RAKALEEYTE
301: EMSRINKVAA ASRLTAEEKK RSAERKARDK AHTIRSTGKL PGACGCF
001: MDTLIKQTRR KHPASQEKIR EVGSSTREKK VSARKSVSFK EDKKKPSNWL QKQFSRQMSG QSYDPIGEMD HAAAVAATAY AIATFEETWL ENYHSGLELG
101: PSSSRSKSRS EELLPLEEPR SLSRRFSGQL SFIDSETKDH KPPTLKSPMR KSSSVKKTFS MNLMGDHTKQ NQDSEEKHER QRKPVSEPPR IQPPLRTRSE
201: PRAPPPPPPP LLSPSPLRLP PRETKRQSSE HTSRKDDSTA DAWEKAELSK IKARYEKLNR KIDLWEAKKR EKARRKLDIS EQSELEQRRK RGLQRFREDT
301: EYIEQIAAGA RAQAEKDRQS KEFKVKEKAG VIRSTGKLPG NACCF
101: PSSSRSKSRS EELLPLEEPR SLSRRFSGQL SFIDSETKDH KPPTLKSPMR KSSSVKKTFS MNLMGDHTKQ NQDSEEKHER QRKPVSEPPR IQPPLRTRSE
201: PRAPPPPPPP LLSPSPLRLP PRETKRQSSE HTSRKDDSTA DAWEKAELSK IKARYEKLNR KIDLWEAKKR EKARRKLDIS EQSELEQRRK RGLQRFREDT
301: EYIEQIAAGA RAQAEKDRQS KEFKVKEKAG VIRSTGKLPG NACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.