Factsheet for Bra012972.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra023252.1-P
Bra035511.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61270.1	Bra023252.1-P	AT1G32230.1	19548978
AT5G61270.1	Bra035511.1-P	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02159	Canola	extracellular, golgi	81.79	75.27
AT5G61270.1	Thale cress	nucleus	36.57	66.94
AT5G61280.1	Thale cress	nucleus	22.24	56.65
Solyc06g069590.2.1	Tomato	cytosol	10.15	34.69
VIT_17s0000g06920.t01	Wine grape	nucleus	11.04	32.6
KRH54632	Soybean	nucleus	10.3	26.54
KRH63271	Soybean	cytosol	6.42	26.38
KRH03090	Soybean	nucleus	7.76	20.47
Zm00001d015411_P001	Maize	nucleus	4.48	17.44
KRH56866	Soybean	nucleus	6.87	17.36
OQU75583	Sorghum	cytosol	6.42	15.36
GSMUA_Achr2P19260_001	Banana	nucleus	7.01	15.31
KXG39897	Sorghum	cytosol	6.72	14.11
TraesCS4A01G053800.2	Wheat	cytosol	6.57	14.1
Bra016720.1-P	Field mustard	nucleus	7.16	14.08
TraesCS4B01G250900.1	Wheat	cytosol	6.57	14.06
Zm00001d028185_P002	Maize	cytosol	6.72	13.93
TraesCS4D01G250800.1	Wheat	nucleus	6.42	13.74
Bra019698.1-P	Field mustard	nucleus	6.42	13.27
Bra004372.1-P	Field mustard	cytosol, mitochondrion, nucleus	2.09	13.08
Zm00001d048109_P002	Maize	mitochondrion	6.57	12.29
Os03t0211500-01	Rice	plasma membrane	5.67	12.18
Bra038312.1-P	Field mustard	nucleus	1.94	12.15
HORVU4Hr1G068900.21	Barley	cytosol	5.67	12.03
Zm00001d014455_P001	Maize	nucleus	5.82	11.24
TraesCS1D01G058700.1	Wheat	nucleus	5.82	11.11
TraesCS1A01G057900.1	Wheat	nucleus	5.82	11.11
HORVU1Hr1G011610.2	Barley	cytosol	5.82	11.11
TraesCS1B01G075600.1	Wheat	nucleus	5.52	10.54
EER90227	Sorghum	nucleus	5.82	10.43
Os10t0325400-01	Rice	cytosol, nucleus	5.67	9.62

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra012972	EnsemblPlants:Bra012972.1	EnsemblPlants:Bra012972.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	UniProt:M4D912	PFAM:PF00010	PFAM:PF03763	PFscan:PS50888	PANTHER:PTHR31471
PANTHER:PTHR31471:SF8	InterPro:Remorin_C	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002540514	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

AT5G61270 (E=1e-106) PIF7 | PIF7 (PHYTOCHROME-INTERACTING FACTOR7); DNA binding / double-stranded DNA binding / transcription factor

Coordinates

chrA03:-:21250047..21256616

Molecular Weight (calculated)

76249.2 Da

IEP (calculated)

9.862

GRAVY (calculated)

-1.003

Length

670 amino acids

Sequence
(BLAST)

001: MPNLSELAIT DNPALNWLKN QAYWYEKMDY YDEKESEFAT SVAAAAFVIR AMEEAYKENA KRMREETKRS RKKKTNPVIA KSEVKRINRS FTQDLTIGEE
101: SFKKQQMDNP QKDRREQEIG SSSRTLGLAS APSKADSWEK SQLDKIKLRY EKMKAEIVGW ENERKSAAKL RMEKRKSELQ KRTEINNQHY KTKLARIQVI
201: ADGAKKQLEE KKRSQEAQVQ EKVKKMRRTG KREDSRQGNS NPLPHMCFLH IKTIVIAGTI VSLLYYFNVD QMKIHYMSCR CDCEELENRG GHQDYTTKTK
301: KKKRKAELSN YGVKELTWEN GQLTVHGLGE GVEPTTTSAN LLWTQALNGC ETLESVVHQA ALQPNKLQSQ NGRDHNNSES KDGSCSRKRG YPQEMDCWFS
401: GQEESHRVGH SVTASASGTN MSWASFESGR SLKTARTGDR DYLFSGSETQ ETEGDEQETR GEAGRSNNGR RGRAAAIHNE SERRRRDRIN QRMRTLQKLL
501: PTASKADKVS ILDDVIEHLK QLQAQVQFMS LRANLPQQMM MPQLPPPQSV LSIQHQQQQQ QQQQQQQQQQ FQMSLLATMA RMGMGGGGNA SYGGLVPPPP
601: PLMIPPMDNR DCTNASSASL TDPYSAFLAQ TMNMDLYNKM AAAIYRQQPD QTPKVNTGMP SSSSNHEKRD

Best Arabidopsis Sequence Match ( AT5G61270.1 )
(BLAST)

001: MSNYGVKELT WENGQLTVHG LGDEVEPTTS NNPIWTQSLN GCETLESVVH QAALQQPSKF QLQSPNGPNH NYESKDGSCS RKRGYPQEMD RWFAVQEESH
101: RVGHSVTASA SGTNMSWASF ESGRSLKTAR TGDRDYFRSG SETQDTEGDE QETRGEAGRS NGRRGRAAAI HNESERRRRD RINQRMRTLQ KLLPTASKAD
201: KVSILDDVIE HLKQLQAQVQ FMSLRANLPQ QMMIPQLPPP QSVLSIQHQQ QQQQQQQQQQ QQQQQFQMSL LATMARMGMG GGGNGYGGLV PPPPPPPMMV
301: PPMGNRDCTN GSSATLSDPY SAFFAQTMNM DLYNKMAAAI YRQQSDQTTK VNIGMPSSSS NHEKRD

Arabidopsis Description

BHLH72Transcription factor PIF7 [Source:UniProtKB/Swiss-Prot;Acc:Q570R7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.