Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 5
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012821_P003 | |
| Zm00001d014423_P002 | |
| Zm00001d030110_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61270.1 | Zm00001d012821_P003 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | Zm00001d014423_P002 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | Zm00001d030110_P001 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU75583 | Sorghum | cytosol | 68.44 | 87.5 |
| KXG39897 | Sorghum | cytosol | 77.37 | 86.83 |
| Zm00001d015411_P001 | Maize | nucleus | 39.11 | 81.4 |
| Zm00001d028185_P002 | Maize | cytosol | 72.63 | 80.5 |
| Os03t0211500-01 | Rice | plasma membrane | 56.15 | 64.42 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 54.47 | 62.3 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 54.19 | 62.18 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 53.07 | 60.7 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 47.49 | 53.8 |
| Zm00001d014455_P001 | Maize | nucleus | 35.47 | 36.6 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 10.06 | 33.64 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 10.06 | 33.64 |
| AT1G69325.1 | Thale cress | nucleus | 10.89 | 32.5 |
| CDY44060 | Canola | nucleus | 9.22 | 30.84 |
| Bra038312.1-P | Field mustard | nucleus | 9.22 | 30.84 |
| KRH50535 | Soybean | nucleus | 27.93 | 30.12 |
| KRH70859 | Soybean | nucleus | 22.35 | 30.08 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 24.86 | 28.99 |
| KRG89501 | Soybean | nucleus | 26.54 | 27.94 |
| KRH74999 | Soybean | nucleus | 20.67 | 27.82 |
| Solyc05g012550.2.1 | Tomato | nucleus | 26.26 | 24.42 |
| Bra019698.1-P | Field mustard | nucleus | 22.07 | 24.38 |
| CDX98136 | Canola | nucleus | 21.51 | 23.77 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 13.69 | 23.56 |
| CDY36418 | Canola | nucleus | 21.23 | 23.53 |
| Bra016720.1-P | Field mustard | nucleus | 21.79 | 22.87 |
| CDY34554 | Canola | nucleus | 21.79 | 22.81 |
| Solyc04g005470.2.1 | Tomato | nucleus | 19.83 | 22.54 |
| CDX96876 | Canola | nucleus | 21.51 | 22.51 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 23.46 | 22.28 |
| AT1G13920.4 | Thale cress | nucleus | 22.63 | 21.43 |
| KRH63271 | Soybean | cytosol | 9.22 | 20.25 |
| Solyc06g069590.2.1 | Tomato | cytosol | 10.89 | 19.9 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 10.89 | 17.18 |
| AT5G61280.1 | Thale cress | nucleus | 12.29 | 16.73 |
| KRH03090 | Soybean | nucleus | 11.17 | 15.75 |
| KRH54632 | Soybean | nucleus | 10.06 | 13.85 |
| KRH56866 | Soybean | nucleus | 10.06 | 13.58 |
| CDY23073 | Canola | nucleus | 14.25 | 7.82 |
| Bra012972.1-P | Field mustard | nucleus | 12.29 | 6.57 |
| CDY02159 | Canola | extracellular, golgi | 11.17 | 5.49 |
| AT5G61270.1 | Thale cress | nucleus | 1.68 | 1.64 |
Protein Annotations
| EnsemblPlants:Zm00001d048109_P002 | EnsemblPlants:Zm00001d048109_T002 | EnsemblPlantsGene:Zm00001d048109 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 |
| PANTHER:PTHR31471:SF38 | PFAM:PF03763 | ProteinID:AQL08835.1 | SEG:seg | UniParc:UPI000221AF93 | UniProt:K7WFZ3 |
| MapMan:35.2 | : | : | : | : | : |
Description
Remorin family protein
Coordinates
chr9:+:150356876..150359747
Molecular Weight (calculated)
39097.6 Da
IEP (calculated)
10.782
GRAVY (calculated)
-0.846
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MQASRLLNTR LSLVTEAARR LVPRNLPTAI GSVSLQSTNT SRAMDGDSKK LRVWFSGVGK GGGGGRQSSA APPQESAPIG RAEMNSSGEF DAAFAATIAA
101: AAFAIAAREE KLAAQKKSVP IEEVPRALSL VKRAGSTKKP AGGNKISRWF SGKEPLEHDD DGPVSRPLKP APGKPEGMPA DHKVAPKILE TSLSVRKGSG
201: SSGKTTDRKG SKKFEQEHVQ KAPSIIRPST SYHSRRNGED AAGVAAIGGT RSKADEWEKA KLAKVREEYE KMMETIAEWE TEKKVKARRH KEQRETVLDR
301: KRAKALEEYN QEMTRISKIA GGARSMAEER KYNDENKIKE KAHKIRSTRK PPRTCACF
101: AAFAIAAREE KLAAQKKSVP IEEVPRALSL VKRAGSTKKP AGGNKISRWF SGKEPLEHDD DGPVSRPLKP APGKPEGMPA DHKVAPKILE TSLSVRKGSG
201: SSGKTTDRKG SKKFEQEHVQ KAPSIIRPST SYHSRRNGED AAGVAAIGGT RSKADEWEKA KLAKVREEYE KMMETIAEWE TEKKVKARRH KEQRETVLDR
301: KRAKALEEYN QEMTRISKIA GGARSMAEER KYNDENKIKE KAHKIRSTRK PPRTCACF
001: MKLACKAIIS KTLKKPKPSN TSSQVLPPYF SLKMDTLIKQ TRRKHPASQE KIREVGSSTR EKKVSARKSV SFKEDKKKPS NWLQKQFSRQ MSGQSYDPIG
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
101: EMDHAAAVAA TAYAIATFEE TWLENYHSGL ELGPSSSRSK SRSEELLPLE EPRSLSRRFS GQLSFIDSET KDHKPPTLKS PMRKSSSVKK TFSMNLMGDH
201: TKQNQDSEEK HERQRKPVSE PPRIQPPLRT RSEPRAPPPP PPPLLSPSPL RLPPRETKRQ SSEHTSRKDD STADAWEKAE LSKIKARYEK LNRKIDLWEA
301: KKREKARRKL DISEQSELEQ RRKRGLQRFR EDTEYIEQIA AGARAQAEKD RQSKEFKVKE KAGVIRSTGK LPGNACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.