Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 47.12 | 91.59 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 47.12 | 91.59 |
| CDY44060 | Canola | nucleus | 42.79 | 83.18 |
| AT1G69325.1 | Thale cress | nucleus | 38.94 | 67.5 |
| Zm00001d015411_P001 | Maize | nucleus | 20.19 | 24.42 |
| CDX98136 | Canola | nucleus | 29.33 | 18.83 |
| KRH74999 | Soybean | nucleus | 24.04 | 18.8 |
| KRH70859 | Soybean | nucleus | 23.56 | 18.42 |
| OQU75583 | Sorghum | cytosol | 23.08 | 17.14 |
| CDY36418 | Canola | nucleus | 25.96 | 16.72 |
| CDX96876 | Canola | nucleus | 26.44 | 16.08 |
| CDY34554 | Canola | nucleus | 25.96 | 15.79 |
| TraesCS4D01G250800.1 | Wheat | nucleus | 23.56 | 15.65 |
| TraesCS4A01G053800.2 | Wheat | cytosol | 23.08 | 15.38 |
| KRH50535 | Soybean | nucleus | 24.52 | 15.36 |
| TraesCS4B01G250900.1 | Wheat | cytosol | 23.08 | 15.34 |
| KXG39897 | Sorghum | cytosol | 23.08 | 15.05 |
| Solyc04g005470.2.1 | Tomato | nucleus | 22.6 | 14.92 |
| Zm00001d028185_P002 | Maize | cytosol | 22.6 | 14.55 |
| Solyc05g012550.2.1 | Tomato | nucleus | 26.44 | 14.29 |
| Zm00001d048109_P002 | Maize | mitochondrion | 23.56 | 13.69 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 20.19 | 13.68 |
| HORVU1Hr1G011610.2 | Barley | cytosol | 22.6 | 13.39 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 19.71 | 12.97 |
| KRG89501 | Soybean | nucleus | 21.15 | 12.94 |
| Os03t0211500-01 | Rice | plasma membrane | 19.23 | 12.82 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 21.63 | 12.82 |
| TraesCS1B01G075600.1 | Wheat | nucleus | 21.63 | 12.82 |
| Zm00001d014455_P001 | Maize | nucleus | 21.15 | 12.68 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 21.15 | 12.54 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 23.08 | 12.15 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 21.63 | 11.94 |
| EER90227 | Sorghum | nucleus | 18.75 | 10.43 |
| CDY23073 | Canola | nucleus | 10.58 | 3.37 |
| CDY02159 | Canola | extracellular, golgi | 9.62 | 2.75 |
Protein Annotations
| EnsemblPlants:CDY40911 | EnsemblPlantsGene:GSBRNA2T00071960001 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF5 |
| PFAM:PF03763 | ProteinID:CDY40911 | ProteinID:CDY40911.1 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0004EEA7E0 |
| UniProt:A0A078HT51 | MapMan:35.1 | : | : | : | : |
Description
BnaC06g30490DBnaC06g30490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HT51]
Coordinates
chrLK032484:+:91443..93806
Molecular Weight (calculated)
24454.3 Da
IEP (calculated)
10.588
GRAVY (calculated)
-0.976
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTNRNRPIN TISFLVVFFL LSTATAARNE SNRTHGANRR FQHAYYSYPH RSCQSFSRPY ARSMCIELER IHRSSRQPLF SPPSPSPPEI DQSEQRAEPV
101: PMGPAVELWK ETEMAKTRTK YEKLREKIML WEDKKTKKAK RNLHRTERGV EKTKLKALQR YTEDNERIEI IVASAREHAY ERQMKEELKV KEKANLMRTS
201: GRSPSTCL
101: PMGPAVELWK ETEMAKTRTK YEKLREKIML WEDKKTKKAK RNLHRTERGV EKTKLKALQR YTEDNERIEI IVASAREHAY ERQMKEELKV KEKANLMRTS
201: GRSPSTCL
001: MNESTVQRAK PEHMAAVVDQ WKETEISKSR KKYEKLSEKI VSWEDKKRKK AKRKLHRTER SVEKTKLKAT QRFRDENERI EIIVASARAH AYESRIKEEL
101: KVKEKANLMR TTGRKPSTCL
101: KVKEKANLMR TTGRKPSTCL
Arabidopsis Description
Remorin family protein [Source:UniProtKB/TrEMBL;Acc:F4I0M0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.