Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G014460.1 | |
| HORVU1Hr1G050960.7 | |
| HORVU5Hr1G124010.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G61270.1 | HORVU0Hr1G014460.1 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | HORVU1Hr1G050960.7 | AT1G32230.1 | 19548978 |
| AT5G61270.1 | HORVU5Hr1G124010.1 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G075600.1 | Wheat | nucleus | 91.45 | 91.45 |
| TraesCS1A01G057900.1 | Wheat | nucleus | 91.17 | 91.17 |
| TraesCS1D01G058700.1 | Wheat | nucleus | 89.46 | 89.46 |
| Os10t0325400-01 | Rice | cytosol, nucleus | 54.13 | 48.1 |
| Zm00001d014455_P001 | Maize | nucleus | 45.3 | 45.82 |
| EER90227 | Sorghum | nucleus | 47.86 | 44.92 |
| HORVU4Hr1G068900.21 | Barley | cytosol | 37.32 | 41.46 |
| Bra004372.1-P | Field mustard | cytosol, mitochondrion, nucleus | 10.26 | 33.64 |
| CDX95945 | Canola | cytosol, mitochondrion, nucleus | 9.97 | 32.71 |
| Bra038312.1-P | Field mustard | nucleus | 9.69 | 31.78 |
| CDY44060 | Canola | nucleus | 9.69 | 31.78 |
| AT1G69325.1 | Thale cress | nucleus | 10.26 | 30.0 |
| KRH50535 | Soybean | nucleus | 27.07 | 28.61 |
| KRG89501 | Soybean | nucleus | 27.35 | 28.24 |
| GSMUA_Achr2P19260_001 | Banana | nucleus | 23.93 | 27.36 |
| KRH70859 | Soybean | nucleus | 20.51 | 27.07 |
| CDY36418 | Canola | nucleus | 23.93 | 26.01 |
| Bra019698.1-P | Field mustard | nucleus | 23.65 | 25.62 |
| Bra016720.1-P | Field mustard | nucleus | 24.5 | 25.22 |
| CDX96876 | Canola | nucleus | 24.5 | 25.15 |
| VIT_01s0011g00820.t01 | Wine grape | nucleus | 26.78 | 24.93 |
| CDX98136 | Canola | nucleus | 22.79 | 24.69 |
| CDY34554 | Canola | nucleus | 23.08 | 23.68 |
| KRH74999 | Soybean | nucleus | 17.66 | 23.31 |
| Solyc05g012550.2.1 | Tomato | nucleus | 25.36 | 23.12 |
| Solyc04g005470.2.1 | Tomato | nucleus | 20.51 | 22.86 |
| CDY40911 | Canola | endoplasmic reticulum, mitochondrion, plastid | 13.39 | 22.6 |
| AT1G13920.4 | Thale cress | nucleus | 23.08 | 21.43 |
| Solyc06g069590.2.1 | Tomato | cytosol | 11.11 | 19.9 |
| KRH63271 | Soybean | cytosol | 9.12 | 19.63 |
| VIT_17s0000g06920.t01 | Wine grape | nucleus | 10.83 | 16.74 |
| KRH03090 | Soybean | nucleus | 11.4 | 15.75 |
| KRH56866 | Soybean | nucleus | 10.83 | 14.34 |
| AT5G61280.1 | Thale cress | nucleus | 10.26 | 13.69 |
| KRH54632 | Soybean | nucleus | 9.97 | 13.46 |
| CDY23073 | Canola | nucleus | 12.54 | 6.75 |
| Bra012972.1-P | Field mustard | nucleus | 11.11 | 5.82 |
| CDY02159 | Canola | extracellular, golgi | 9.12 | 4.4 |
| AT5G61270.1 | Thale cress | nucleus | 1.99 | 1.91 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G011610.2 | EnsemblPlantsGene:HORVU1Hr1G011610 | InterPro:Remorin_C | ncoils:Coil | PANTHER:PTHR31471 | PANTHER:PTHR31471:SF8 |
| PFAM:PF03763 | SEG:seg | UniParc:UPI000B463743 | UniProt:A0A287EMP8 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr1H:-:28059407..28062039
Molecular Weight (calculated)
39085.3 Da
IEP (calculated)
10.419
GRAVY (calculated)
-1.079
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGRLRFCRV RFSGVGQEDQ GSGQAMAMPP QQQRGKPFGR GEEYDAAYAA TVAAVAYAIA AMEEEKLPSQ QKPIPEKAAS RQKRVTVHEP TAGPPPRSPP
101: RRGESIKRPT EGSKISRLFS GNKEIVEIGD EDEQGANVSV RRPAKLAPKK SGGLTPAQNV VGKVVDSVPN LKDNPSFTRK IPDKKRSRNF EQEEANRKAK
201: PGVNPTTSFP RERKESWKHE QEPANQRAPP AARPTGMVYS SEAEMMAAAW EKEKLAKIKE QYNETMETIA EWETEKKAKA RRQKEPKEGD SEKKRAKALE
301: EYNDEMKRIS KVAAASRLSA EEKKRSAEGK VWEKAAKIRV TGKLPRSCGC F
101: RRGESIKRPT EGSKISRLFS GNKEIVEIGD EDEQGANVSV RRPAKLAPKK SGGLTPAQNV VGKVVDSVPN LKDNPSFTRK IPDKKRSRNF EQEEANRKAK
201: PGVNPTTSFP RERKESWKHE QEPANQRAPP AARPTGMVYS SEAEMMAAAW EKEKLAKIKE QYNETMETIA EWETEKKAKA RRQKEPKEGD SEKKRAKALE
301: EYNDEMKRIS KVAAASRLSA EEKKRSAEGK VWEKAAKIRV TGKLPRSCGC F
001: MDTLIKQTRR KHPASQEKIR EVGSSTREKK VSARKSVSFK EDKKKPSNWL QKQFSRQMSG QSYDPIGEMD HAAAVAATAY AIATFEETWL ENYHSGLELG
101: PSSSRSKSRS EELLPLEEPR SLSRRFSGQL SFIDSETKDH KPPTLKSPMR KSSSVKKTFS MNLMGDHTKQ NQDSEEKHER QRKPVSEPPR IQPPLRTRSE
201: PRAPPPPPPP LLSPSPLRLP PRETKRQSSE HTSRKDDSTA DAWEKAELSK IKARYEKLNR KIDLWEAKKR EKARRKLDIS EQSELEQRRK RGLQRFREDT
301: EYIEQIAAGA RAQAEKDRQS KEFKVKEKAG VIRSTGKLPG NACCF
101: PSSSRSKSRS EELLPLEEPR SLSRRFSGQL SFIDSETKDH KPPTLKSPMR KSSSVKKTFS MNLMGDHTKQ NQDSEEKHER QRKPVSEPPR IQPPLRTRSE
201: PRAPPPPPPP LLSPSPLRLP PRETKRQSSE HTSRKDDSTA DAWEKAELSK IKARYEKLNR KIDLWEAKKR EKARRKLDIS EQSELEQRRK RGLQRFREDT
301: EYIEQIAAGA RAQAEKDRQS KEFKVKEKAG VIRSTGKLPG NACCF
Arabidopsis Description
Remorin family protein [Source:TAIR;Acc:AT1G13920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.