Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G321300.1 | Wheat | nucleus | 89.98 | 91.56 |
| TraesCS5B01G557500.2 | Wheat | nucleus | 88.95 | 89.1 |
| TraesCS5D01G551800.3 | Wheat | nucleus | 88.6 | 88.75 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 76.34 | 76.6 |
| Os03t0854800-03 | Rice | nucleus | 54.92 | 54.45 |
| EER90487 | Sorghum | nucleus | 52.85 | 53.4 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 53.02 | 46.8 |
| GSMUA_Achr11P... | Banana | nucleus | 40.76 | 45.38 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 40.76 | 42.91 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 41.28 | 42.23 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 29.71 | 41.05 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 40.76 | 41.04 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 37.65 | 35.8 |
| CDY60257 | Canola | cytosol | 18.65 | 33.03 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 29.53 | 32.08 |
| Solyc08g005270.2.1 | Tomato | nucleus | 32.47 | 31.33 |
| PGSC0003DMT400038368 | Potato | nucleus | 31.09 | 30.56 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 32.64 | 30.34 |
| Solyc08g076420.2.1 | Tomato | nucleus | 30.92 | 29.98 |
| Bra023252.1-P | Field mustard | nucleus | 24.52 | 29.46 |
| CDY67026 | Canola | nucleus | 27.29 | 28.73 |
| Bra017317.1-P | Field mustard | nucleus | 26.25 | 28.68 |
| CDY22597 | Canola | nucleus | 26.94 | 28.68 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 28.5 | 28.3 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 28.5 | 28.3 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 25.56 | 28.24 |
| CDY32124 | Canola | nucleus | 25.73 | 28.11 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 23.83 | 27.99 |
| CDY31694 | Canola | nucleus | 25.22 | 27.65 |
| AT1G32230.1 | Thale cress | nucleus | 27.98 | 27.5 |
| Bra035511.1-P | Field mustard | cytosol | 26.08 | 27.06 |
| CDY43007 | Canola | nucleus | 27.12 | 27.02 |
| PGSC0003DMT400043197 | Potato | nucleus | 27.29 | 26.6 |
| AT2G35510.3 | Thale cress | cytosol | 25.73 | 26.23 |
| Solyc06g066330.2.1 | Tomato | nucleus | 26.42 | 25.76 |
| CDY41739 | Canola | cytosol | 23.49 | 24.73 |
| HORVU4Hr1G065800.1 | Barley | nucleus, plastid | 19.0 | 21.28 |
| KRH74373 | Soybean | mitochondrion | 16.93 | 20.55 |
| HORVU7Hr1G095570.3 | Barley | nucleus | 22.28 | 14.33 |
Protein Annotations
| EMBL:AK357743 | EMBL:AK364028 | EnsemblPlants:HORVU5Hr1G124010.1 | EnsemblPlantsGene:HORVU5Hr1G124010 | Gene3D:3.90.228.10 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003950 | GO:GO:0016740 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST |
| PANTHER:PTHR32263 | PANTHER:PTHR32263:SF4 | PFAM:PF12174 | PFscan:PS51059 | SUPFAM:SSF56399 | UniParc:UPI0002005135 |
| UniProt:F2D1I6 | MapMan:35.1 | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D1I6]
Coordinates
chrchr5H:-:664994797..664999993
Molecular Weight (calculated)
64402.4 Da
IEP (calculated)
8.475
GRAVY (calculated)
-0.429
Length
579 amino acids
Sequence
(BLAST)
(BLAST)
001: MERKTGMGLD ENVLKATDRK RKHESAVKRT GTDDSAEVSQ HADGSGLLKK SKMTFCAGHI LEWYKNFKTS GLPVRVLCYH QGKWKDFPEH VVNLVQQDFQ
101: LKRPITNAVF KNQQVLLDFM HMVCIDSAVT TNKPIAWIDV HGKRFFPDLC AGLITSKPSQ HGESDPSGKS EAGECAGTLI LTAAAESLSS DSVDAVLPHV
201: NKANKILEQE QKVHNDAVVE NKAGPAICLN ESAHGTIHAA TCKQKIGQRV DSAVRKLLLE GVGQPFSEED IIGIYRTPLV DQQGRARFNL FQKELEVTKM
301: HRGNANVRYA WLPCSKDAME EMMLRGVLEV TKPMLGPMYG IGTHLAPANC AQTCASYSDI DENGIMRMML CRVIMGNVEV VLPGSKQFQP TNGTFDSGVD
401: DLQKPKHYII WDANVHRHIY AEYAVLIKAP SMTNEYLARE DTASNVSEIR NSGSEESVIK DDSSESLASP ADKQQAPRFG RAPTRRPPTS PWMPLPMLFA
501: AISTKVPRSD MDIIHGHYEE FKRRKISRPD FVRRLRQIVG DKLLVSTVVR LQPKEVPPMA GAELLPRRAP GTGEQHLHK
101: LKRPITNAVF KNQQVLLDFM HMVCIDSAVT TNKPIAWIDV HGKRFFPDLC AGLITSKPSQ HGESDPSGKS EAGECAGTLI LTAAAESLSS DSVDAVLPHV
201: NKANKILEQE QKVHNDAVVE NKAGPAICLN ESAHGTIHAA TCKQKIGQRV DSAVRKLLLE GVGQPFSEED IIGIYRTPLV DQQGRARFNL FQKELEVTKM
301: HRGNANVRYA WLPCSKDAME EMMLRGVLEV TKPMLGPMYG IGTHLAPANC AQTCASYSDI DENGIMRMML CRVIMGNVEV VLPGSKQFQP TNGTFDSGVD
401: DLQKPKHYII WDANVHRHIY AEYAVLIKAP SMTNEYLARE DTASNVSEIR NSGSEESVIK DDSSESLASP ADKQQAPRFG RAPTRRPPTS PWMPLPMLFA
501: AISTKVPRSD MDIIHGHYEE FKRRKISRPD FVRRLRQIVG DKLLVSTVVR LQPKEVPPMA GAELLPRRAP GTGEQHLHK
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.