Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043197 | Potato | nucleus | 78.28 | 78.28 |
| Solyc08g076420.2.1 | Tomato | nucleus | 45.12 | 44.89 |
| Solyc08g005270.2.1 | Tomato | nucleus | 35.19 | 34.83 |
| GSMUA_Achr11P... | Banana | nucleus | 26.94 | 30.77 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 28.45 | 29.86 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 28.11 | 29.04 |
| Solyc05g005280.2.1 | Tomato | cytosol | 14.81 | 28.95 |
| TraesCS1B01G210300.4 | Wheat | peroxisome | 27.78 | 28.01 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 27.78 | 27.87 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 25.76 | 27.82 |
| TraesCS4A01G321300.1 | Wheat | nucleus | 26.6 | 27.77 |
| Os10t0577800-01 | Rice | nucleus | 27.61 | 27.75 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 19.53 | 27.68 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 27.44 | 27.53 |
| TraesCS5D01G551800.3 | Wheat | nucleus | 26.77 | 27.51 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 27.95 | 27.26 |
| TraesCS5B01G557500.2 | Wheat | nucleus | 26.09 | 26.82 |
| EER90487 | Sorghum | nucleus | 25.76 | 26.7 |
| Solyc05g005290.2.1 | Tomato | cytosol | 10.44 | 26.61 |
| HORVU5Hr1G124010.1 | Barley | nucleus | 25.76 | 26.42 |
| KXG38822 | Sorghum | nucleus | 26.26 | 26.22 |
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 26.09 | 26.01 |
| Os03t0854800-03 | Rice | nucleus | 25.25 | 25.68 |
| Solyc01g057370.1.1 | Tomato | nucleus | 13.47 | 25.4 |
| Solyc04g077080.1.1 | Tomato | cytosol | 15.32 | 24.8 |
| Zm00001d014423_P002 | Maize | nucleus | 25.42 | 24.63 |
| Solyc04g077090.1.1 | Tomato | cytosol | 17.68 | 23.7 |
| HORVU0Hr1G014460.1 | Barley | nucleus | 22.9 | 23.57 |
| Zm00001d012821_P003 | Maize | extracellular, vacuole | 25.25 | 22.87 |
| Solyc04g077070.1.1 | Tomato | cytosol, extracellular, nucleus, plastid | 7.91 | 21.76 |
| Solyc03g114360.2.1 | Tomato | nucleus | 13.13 | 20.8 |
| Solyc04g077100.2.1 | Tomato | plastid | 15.15 | 20.74 |
| Solyc01g057360.1.1 | Tomato | cytosol | 10.61 | 20.45 |
Protein Annotations
| EnsemblPlants:Solyc06g066330.2.1 | EnsemblPlantsGene:Solyc06g066330.2 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 |
| GO:GO:0016740 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF4 |
| PFAM:PF12174 | PFscan:PS51059 | SEG:seg | SUPFAM:SSF56399 | UniParc:UPI0002765D95 | UniProt:K4C7Q9 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:41614736..41619175
Molecular Weight (calculated)
67313.8 Da
IEP (calculated)
7.675
GRAVY (calculated)
-0.427
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPKGVGFLD SGRRTVVGEK SKVVTQNLAH LLRASSEKIS IQSNCDRKLE KRKRIVHCES NSQSHLRISE HKNYLNFKRS RLPLRVLFYQ NGEWTDFPQD
101: IIPIVKEDFR AKKTVIEVKV CDFHIILDIL HMVQIDVING LQKPIAWIDE VGRCFFPESY LISSEMLGNF ETLSKRTEEF MTTEPDRITD MKLQLDTDLN
201: GLDNRNLEED VEESNIGYKR NKVCPLKDSQ EVADYKKSDA KIAQVAENKQ NQETPSPDLE ASLKFVNAES VKNMFIMGMN VNPNKCEIKI NKCSSNYLTT
301: RLELFEKQVE ITQKYRGNSN VRYAWLAASK DLISTIMKYG LAPGGSKYRP KFGVGVHLSA LHCASKSAIN CDADENGVHY MVFARVILGN MEPLHCGSEQ
401: WHPSDEKYDS GVDDLENPTH YVIWNMNLNT HIYPVCVVSF RIPPGAEGPR VGNDSRIDVS GVNTCPRGPV EQGSHRFQVS LVKLALEEAA RIPKSSGVPF
501: SLLIDAISNV VNAEKMNHVT RSYELLGFKK ICRDEFEKRL VAIVGLTLLK STTKSLLCKI QSKPIEMVQP KQEPQSADFK GNTALFHWIE PQTE
101: IIPIVKEDFR AKKTVIEVKV CDFHIILDIL HMVQIDVING LQKPIAWIDE VGRCFFPESY LISSEMLGNF ETLSKRTEEF MTTEPDRITD MKLQLDTDLN
201: GLDNRNLEED VEESNIGYKR NKVCPLKDSQ EVADYKKSDA KIAQVAENKQ NQETPSPDLE ASLKFVNAES VKNMFIMGMN VNPNKCEIKI NKCSSNYLTT
301: RLELFEKQVE ITQKYRGNSN VRYAWLAASK DLISTIMKYG LAPGGSKYRP KFGVGVHLSA LHCASKSAIN CDADENGVHY MVFARVILGN MEPLHCGSEQ
401: WHPSDEKYDS GVDDLENPTH YVIWNMNLNT HIYPVCVVSF RIPPGAEGPR VGNDSRIDVS GVNTCPRGPV EQGSHRFQVS LVKLALEEAA RIPKSSGVPF
501: SLLIDAISNV VNAEKMNHVT RSYELLGFKK ICRDEFEKRL VAIVGLTLLK STTKSLLCKI QSKPIEMVQP KQEPQSADFK GNTALFHWIE PQTE
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.