Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d030110_P001 | Maize | mitochondrion, nucleus | 90.25 | 90.1 |
| Zm00001d014423_P002 | Maize | nucleus | 88.57 | 85.97 |
| TraesCS1B01G210300.4 | Wheat | peroxisome | 65.04 | 65.7 |
| TraesCS1A01G195400.4 | Wheat | cytosol | 65.04 | 65.37 |
| Os10t0577800-01 | Rice | nucleus | 64.87 | 65.31 |
| TraesCS1D01G199200.1 | Wheat | cytosol, nucleus, plastid | 64.54 | 64.86 |
| HORVU1Hr1G050960.7 | Barley | nucleus | 63.53 | 62.07 |
| GSMUA_Achr5P14120_001 | Banana | nucleus | 42.35 | 44.52 |
| GSMUA_Achr11P... | Banana | nucleus | 37.98 | 43.46 |
| GSMUA_Achr2P18060_001 | Banana | nucleus | 39.66 | 41.04 |
| GSMUA_Achr8P14660_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 37.82 | 40.91 |
| GSMUA_Achr4P19000_001 | Banana | nucleus | 27.56 | 39.14 |
| EER90487 | Sorghum | nucleus | 36.81 | 38.22 |
| VIT_02s0012g01920.t01 | Wine grape | cytosol | 29.41 | 32.83 |
| CDY60257 | Canola | cytosol | 17.31 | 31.5 |
| VIT_02s0012g01930.t01 | Wine grape | nucleus | 32.6 | 31.14 |
| Solyc08g005270.2.1 | Tomato | nucleus | 31.26 | 31.0 |
| KRH74370 | Soybean | mitochondrion, nucleus, plastid | 28.91 | 29.5 |
| KRH39574 | Soybean | mitochondrion, nucleus, plastid | 28.74 | 29.33 |
| Bra023252.1-P | Field mustard | nucleus | 23.7 | 29.25 |
| CDY22597 | Canola | nucleus | 26.55 | 29.04 |
| PGSC0003DMT400038368 | Potato | nucleus | 28.74 | 29.03 |
| CDY32124 | Canola | nucleus | 25.71 | 28.87 |
| Bra005336.1-P | Field mustard | cytosol, nucleus, plastid | 25.21 | 28.63 |
| AT2G35510.3 | Thale cress | cytosol | 26.89 | 28.17 |
| Solyc08g076420.2.1 | Tomato | nucleus | 28.24 | 28.14 |
| PGSC0003DMT400043197 | Potato | nucleus | 28.07 | 28.11 |
| Bra017317.1-P | Field mustard | nucleus | 25.04 | 28.11 |
| CDX84199 | Canola | cytosol, nucleus, plastid | 23.19 | 27.99 |
| CDY43007 | Canola | nucleus | 27.23 | 27.88 |
| CDY31694 | Canola | nucleus | 24.71 | 27.84 |
| CDY67026 | Canola | nucleus | 25.71 | 27.82 |
| AT1G32230.1 | Thale cress | nucleus | 27.23 | 27.5 |
| Bra035511.1-P | Field mustard | cytosol | 24.71 | 26.34 |
| Solyc06g066330.2.1 | Tomato | nucleus | 26.22 | 26.26 |
| EER92605 | Sorghum | nucleus | 18.99 | 25.17 |
| CDY41739 | Canola | cytosol | 23.19 | 25.09 |
| KRH74373 | Soybean | mitochondrion | 16.13 | 20.13 |
| EES15499 | Sorghum | nucleus | 23.87 | 15.71 |
Protein Annotations
| EnsemblPlants:KXG38822 | EnsemblPlantsGene:SORBI_3001G284100 | Gene3D:3.90.228.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003950 |
| GO:GO:0016740 | InterPro:IPR012317 | InterPro:Poly(ADP-ribose)pol_cat_dom | InterPro:RST | PANTHER:PTHR32263 | PANTHER:PTHR32263:SF10 |
| PFAM:PF12174 | PFscan:PS51059 | ProteinID:KXG38822 | ProteinID:KXG38822.1 | ProteinID:KXG38823.1 | SEG:seg |
| SUPFAM:SSF56399 | UniParc:UPI0001C80B44 | UniProt:A0A1B6QLL7 | MapMan:35.1 | : | : |
Description
hypothetical protein
Coordinates
chr1:+:55672648..55677700
Molecular Weight (calculated)
66574.9 Da
IEP (calculated)
7.734
GRAVY (calculated)
-0.429
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMNGKALD KCGRNINSLK RKRESPAAYD ADVFLTSELH QHPVNDSAVR FHVDQDRKAK IVCHFNKQVL QSYKNFMSSA PPKRILLRKG AVWKDVPEKI
101: VKLAQADFRA KKTITETGYQ NHLFLLDFAH MTFIDTKTGL QRPIAWIDEN GKRYFPESFM QDQKLFIKKD FGNGNPEYIS VEPNGTREMN DQLGASESSA
201: ESSNFDSSTE DISSPKRSRA EKNSIIKKYC DMGEAIGENE PCALLPTACN LLPHQANLGE VSRAQRTIEA VEKLLLQGMG SVIESKDIIG IFRTPLLDDH
301: RQVRYHIHQK QVQVTGCHRG NANVRYAWLP CSKSTVHEMM LNGVLQVHKP PINFAAYGEG ILLTPANRSD ACVKYSDVDE NGIVHMMLCR VIMGNVEIVH
401: PGSNQHRPSS DHVDSGVDDL KNPQHYIVWD MNMNRHIYSE FVVIVKLPSK TKDSFVSQEE CQNSSDLSLV LNSSSPDCIS EEMNLEAPPA LGGGCAAPML
501: GDSMEKAPSS PWMPFSMLFA AISTKVSPEN MDMVISCYEE FKSKKISRGE LVKKLRHVVG DRVLISTIMR LQDKLPPVER REAPDASAAK MVAKP
101: VKLAQADFRA KKTITETGYQ NHLFLLDFAH MTFIDTKTGL QRPIAWIDEN GKRYFPESFM QDQKLFIKKD FGNGNPEYIS VEPNGTREMN DQLGASESSA
201: ESSNFDSSTE DISSPKRSRA EKNSIIKKYC DMGEAIGENE PCALLPTACN LLPHQANLGE VSRAQRTIEA VEKLLLQGMG SVIESKDIIG IFRTPLLDDH
301: RQVRYHIHQK QVQVTGCHRG NANVRYAWLP CSKSTVHEMM LNGVLQVHKP PINFAAYGEG ILLTPANRSD ACVKYSDVDE NGIVHMMLCR VIMGNVEIVH
401: PGSNQHRPSS DHVDSGVDDL KNPQHYIVWD MNMNRHIYSE FVVIVKLPSK TKDSFVSQEE CQNSSDLSLV LNSSSPDCIS EEMNLEAPPA LGGGCAAPML
501: GDSMEKAPSS PWMPFSMLFA AISTKVSPEN MDMVISCYEE FKSKKISRGE LVKKLRHVVG DRVLISTIMR LQDKLPPVER REAPDASAAK MVAKP
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNGARGSG SANSVGSSTT
501: RPKSPWMPFP TLFAAISHKV AENDMLLINA DYQQLRDKKM TRAEFVRKLR VIVGDDLLRS TITTLQNQVR
Arabidopsis Description
RCD1Poly [ADP-ribose] polymerase [Source:UniProtKB/TrEMBL;Acc:M5BF30]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.