Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G00050.1 | EER90487 | AT1G32230.1 | 19548978 |
| AT4G00050.1 | KXG38822 | AT1G32230.1 | 19548978 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029898_P001 | Maize | nucleus | 77.65 | 85.1 |
| Os10t0556200-01 | Rice | nucleus | 63.31 | 73.12 |
| TraesCS1B01G226200.2 | Wheat | nucleus | 61.08 | 72.09 |
| TraesCS1D01G215600.2 | Wheat | nucleus | 60.52 | 71.43 |
| TraesCS1A01G212700.1 | Wheat | nucleus | 60.52 | 71.43 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 61.08 | 70.69 |
| AT4G00050.1 | Thale cress | nucleus | 33.33 | 44.86 |
| CDX83214 | Canola | nucleus | 29.05 | 44.83 |
| CDX91917 | Canola | nucleus | 28.86 | 44.67 |
| Bra037312.1-P | Field mustard | nucleus | 17.13 | 44.02 |
| CDY65390 | Canola | nucleus | 17.13 | 44.02 |
| CDX74328 | Canola | nucleus | 31.47 | 43.67 |
| Bra000560.1-P | Field mustard | nucleus | 31.1 | 43.04 |
| CDY21498 | Canola | nucleus | 30.73 | 42.64 |
| VIT_15s0021g02690.t01 | Wine grape | nucleus | 34.45 | 39.78 |
| Solyc01g090790.2.1 | Tomato | nucleus | 32.96 | 38.15 |
| PGSC0003DMT400066807 | Potato | nucleus | 32.77 | 37.93 |
| KRH75301 | Soybean | nucleus | 32.22 | 37.77 |
| KRG88937 | Soybean | nucleus | 32.59 | 37.63 |
| Solyc10g018510.1.1 | Tomato | nucleus | 23.84 | 32.74 |
| OQU75890 | Sorghum | nucleus | 13.41 | 24.74 |
| EES11436 | Sorghum | nucleus | 8.57 | 24.47 |
| KXG31309 | Sorghum | nucleus | 12.48 | 22.95 |
| KXG23955 | Sorghum | nucleus | 16.01 | 18.11 |
| OQU88567 | Sorghum | nucleus | 9.31 | 18.05 |
| EES05953 | Sorghum | nucleus | 12.66 | 17.3 |
| OQU88421 | Sorghum | nucleus | 13.22 | 17.19 |
| KXG37359 | Sorghum | nucleus | 8.94 | 16.9 |
| OQU91282 | Sorghum | nucleus | 16.76 | 16.67 |
| EER89334 | Sorghum | nucleus | 13.41 | 16.11 |
| KXG32305 | Sorghum | nucleus | 17.5 | 15.56 |
| OQU89497 | Sorghum | nucleus | 12.85 | 14.84 |
| KXG37432 | Sorghum | plastid | 11.92 | 13.28 |
| KXG21255 | Sorghum | nucleus | 16.95 | 13.23 |
| KXG19523 | Sorghum | nucleus | 10.8 | 11.79 |
| KXG30460 | Sorghum | nucleus | 9.87 | 10.47 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | UniProt:A0A1Z5S8A5 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlants:OQU92150 |
| ProteinID:OQU92150 | ProteinID:OQU92150.1 | ProteinID:OQU92151.1 | ProteinID:OQU92152.1 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF173 | SMART:SM00353 | EnsemblPlantsGene:SORBI_3001G300201 | SUPFAM:SSF47459 | UniParc:UPI000B426BEB |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:58160860..58167872
Molecular Weight (calculated)
55313.1 Da
IEP (calculated)
6.783
GRAVY (calculated)
-0.386
Length
537 amino acids
Sequence
(BLAST)
(BLAST)
001: MNQCVPSWDL DDPALVVAAG GGGGGGLNHH QVSTTIAGGA PHRGLQVSAG GGAFAPVVLP MSDQYYEVAE LTWEKGNISS HGLGLLNRPV PVQQHKYAPP
101: PSSSQLQAIG GGGGGGSSGD RETLEAVVGE AATRSSHFLS QRHPVPWVGV GGAAVDAVAR SAADALVPCA AARVHDEAAA AEGGDAGAGP GSRRKRARVV
201: GEDGGLVCAS QGSTAAAPGP RRRGESALLT LDYACCGTGG ADDVCGFTTT TTNNSTSLER DDKGSPDTEN TSIGGGASDS RCFSRRSQRD GLCDEDENVV
301: INGDGAMRSS ISTKRSRAAA IHNESERKRR DRINQKMKTL QKLVPNSNKT DKASMLDEVI DYLKQLQAQV QVMSRMSSMM MPMGMAMPQL HQMSVMAQMA
401: QMAQMAQTMA QGMMNMGSLA QPGYAGLTPP MMHPPPPFVP MSWADPAAAA TTSGAGAGAG PGPAAAAASS LAQHTGGGGA AVPDAFSAFL ACQAQQSGQQ
501: QQQQPPGSME AYNRMVALYQ KMNQLQQSEP SSNPSKQ
101: PSSSQLQAIG GGGGGGSSGD RETLEAVVGE AATRSSHFLS QRHPVPWVGV GGAAVDAVAR SAADALVPCA AARVHDEAAA AEGGDAGAGP GSRRKRARVV
201: GEDGGLVCAS QGSTAAAPGP RRRGESALLT LDYACCGTGG ADDVCGFTTT TTNNSTSLER DDKGSPDTEN TSIGGGASDS RCFSRRSQRD GLCDEDENVV
301: INGDGAMRSS ISTKRSRAAA IHNESERKRR DRINQKMKTL QKLVPNSNKT DKASMLDEVI DYLKQLQAQV QVMSRMSSMM MPMGMAMPQL HQMSVMAQMA
401: QMAQMAQTMA QGMMNMGSLA QPGYAGLTPP MMHPPPPFVP MSWADPAAAA TTSGAGAGAG PGPAAAAASS LAQHTGGGGA AVPDAFSAFL ACQAQQSGQQ
501: QQQQPPGSME AYNRMVALYQ KMNQLQQSEP SSNPSKQ
001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
Arabidopsis Description
UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.