Factsheet for Bra000560.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra023252.1-P
Bra035511.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00050.1	Bra023252.1-P	AT1G32230.1	19548978
AT4G00050.1	Bra035511.1-P	AT1G32230.1	19548978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83214	Canola	nucleus	86.6	96.55
CDX74328	Canola	nucleus	96.13	96.38
CDY21498	Canola	nucleus	95.36	95.61
CDX91917	Canola	nucleus	82.73	92.51
Bra037312.1-P	Field mustard	nucleus	43.3	80.38
AT4G00050.1	Thale cress	nucleus	81.19	78.95
VIT_15s0021g02690.t01	Wine grape	nucleus	57.99	48.39
KRH75301	Soybean	nucleus	55.93	47.38
KRG88937	Soybean	nucleus	56.19	46.88
PGSC0003DMT400066807	Potato	nucleus	53.35	44.61
Solyc10g018510.1.1	Tomato	nucleus	40.46	40.15
Os10t0556200-01	Rice	nucleus	40.21	33.55
TraesCS1B01G226200.2	Wheat	nucleus	39.18	33.41
HORVU1Hr1G054260.3	Barley	nucleus	39.69	33.19
TraesCS1D01G215600.2	Wheat	nucleus	38.66	32.97
Zm00001d029898_P001	Maize	nucleus	41.49	32.86
TraesCS1A01G212700.1	Wheat	nucleus	38.14	32.53
OQU92150	Sorghum	nucleus	43.04	31.1
Bra012133.1-P	Field mustard	nucleus, plastid	13.4	24.3
Bra011237.1-P	Field mustard	plastid	12.37	22.22
Bra010591.1-P	Field mustard	nucleus, plastid	18.81	21.41
Bra011740.1-P	Field mustard	nucleus, plastid	19.07	20.9
Bra002679.1-P	Field mustard	nucleus	14.43	19.38
Bra020398.1-P	Field mustard	nucleus	13.92	19.29
Bra003483.1-P	Field mustard	nucleus	15.21	19.22
Bra004489.1-P	Field mustard	nucleus	19.59	19.0
Bra000436.1-P	Field mustard	nucleus	19.33	18.56
Bra037742.1-P	Field mustard	nucleus	19.33	18.47
Bra006788.1-P	Field mustard	nucleus	14.18	18.33
Bra000283.1-P	Field mustard	nucleus	19.07	17.92
Bra007430.1-P	Field mustard	nucleus	18.81	17.14
Bra036256.1-P	Field mustard	nucleus	9.79	16.67
Bra020017.1-P	Field mustard	nucleus	21.13	16.6
Bra031668.1-P	Field mustard	nucleus	20.36	16.06
Bra007863.1-P	Field mustard	nucleus	13.4	15.38
Bra018539.1-P	Field mustard	nucleus	10.05	15.35
Bra032111.1-P	Field mustard	nucleus	13.4	14.94
Bra007660.1-P	Field mustard	nucleus	15.72	14.46
Bra000872.1-P	Field mustard	nucleus	11.34	14.24
Bra033368.1-P	Field mustard	nucleus	11.34	14.15
Bra011061.1-P	Field mustard	nucleus	17.78	13.35
Bra011062.1-P	Field mustard	cytosol	13.14	11.14

Protein Annotations

EnsemblPlants:Bra000560.1	EnsemblPlants:Bra000560.1-P	EnsemblPlantsGene:Bra000560	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
ncoils:Coil	PANTHER:PTHR12565	PANTHER:PTHR12565:SF173	PFAM:PF00010	PFscan:PS50888	SEG:seg
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000254011E	UniProt:M4C8N2	MapMan:15.5.32	:

Description

AT4G00050 (E=7e-110) UNE10 | UNE10 (unfertilized embryo sac 10); DNA binding / transcription factor

Coordinates

chrA03:+:11774574..11776719

Molecular Weight (calculated)

42374.2 Da

IEP (calculated)

7.283

GRAVY (calculated)

-0.634

Length

388 amino acids

Sequence
(BLAST)

001: MSQRVPNYHI DDTPAPATVR STNAADIPML DYGVAELTWE NGQLGLHGVC PPRVPAPSKY STGAGGTLES IVEQATRFPN PKPSDELVPS FHHRYSRVGM
101: DALVPEQQSQ PATGVGSCSD GHPMNGGKRS RVAPEWSASG SQRLTIDTYG FTSTSLDDNS SSGGKPFTKT TNIDDHDSVE EEEEEKHTGG KSSASTKRSR
201: AAAIHNQSER KRRDKINQRM KTLQKLVPNS SKTDKASMLD EVIEYLKQLQ AQVCMMSRMN MPSMMLPMAM QQQQQQLQLN LMSSSMGLGL RMGMPGLGLV
301: DLSSMNRAAT ATAPNIHANM MQNPFVPMTS TSWDASSSTD PRFQSPLIPD PMSAFLACSS QPTTMEAYSR MAALYQQMQQ QLPPSNPK

Best Arabidopsis Sequence Match ( AT4G00050.1 )
(BLAST)

001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK

Arabidopsis Description

UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.