Factsheet for Bra000872.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000276.1-P
Bra004712.1-P
Bra006236.1-P
Bra008673.1-P
Bra008782.1-P
Bra013885.1-P
Bra016854.1-P
Bra019176.1-P
Bra019509.1-P
Bra023448.1-P
Bra025066.1-P
Bra033788.1-P
Bra035058.1-P
Bra039224.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02590.1	Bra035058.1-P	AT1G78680.1	21798944
AT4G02590.1	Bra039224.1-P	AT2G24020.1	21798944
AT4G02590.1	Bra000276.1-P	AT2G42870.1	21798944
AT4G02590.1	Bra004712.1-P	AT2G42870.1	21798944
AT4G02590.1	Bra016854.1-P	AT2G42870.1	21798944
AT4G02590.1	Bra019509.1-P	AT3G47640.1	21798944
AT4G02590.1	Bra033788.1-P	AT3G47640.1	21798944
AT4G02590.1	Bra013885.1-P	AT4G25315.1	21798944
AT4G02590.1	Bra019176.1-P	AT4G25315.1	21798944
AT4G02590.1	Bra006236.1-P	AT5G14070.1	21798944
AT4G02590.1	Bra008782.1-P	AT5G14070.1	21798944
AT4G02590.1	Bra023448.1-P	AT5G14070.1	21798944
AT4G02590.1	Bra008673.1-P	AT5G15802.1	21798944
AT4G02590.1	Bra025066.1-P	AT5G45620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90930	Canola	nucleus	98.71	98.39
Bra036256.1-P	Field mustard	nucleus	67.31	91.23
AT4G02590.1	Thale cress	nucleus	89.64	89.35
Bra018539.1-P	Field mustard	nucleus	70.23	85.43
Bra033368.1-P	Field mustard	nucleus	78.64	78.14
Os07t0182200-01	Rice	cytosol	33.01	75.0
KRG95612	Soybean	nucleus	67.64	71.58
VIT_07s0141g00220.t01	Wine grape	nucleus	65.7	70.24
KRH32094	Soybean	nucleus	64.08	69.96
KRH67287	Soybean	nucleus	66.02	69.86
Solyc09g065820.2.1	Tomato	nucleus	67.64	69.21
PGSC0003DMT400049768	Potato	nucleus	67.31	68.87
KRH55381	Soybean	cytosol	15.21	68.12
GSMUA_Achr5P03100_001	Banana	nucleus	51.46	58.03
OQU88567	Sorghum	nucleus	51.46	57.4
Zm00001d013073_P002	Maize	nucleus	52.43	56.84
KXG37359	Sorghum	nucleus	52.1	56.69
TraesCS5B01G445900.1	Wheat	nucleus	51.13	56.23
TraesCS5D01G449200.1	Wheat	nucleus	51.13	56.23
GSMUA_Achr4P21070_001	Banana	nucleus	54.37	56.0
Zm00001d018967_P001	Maize	nucleus	51.46	55.79
Os03t0797600-01	Rice	nucleus	52.43	55.1
TraesCS5A01G441900.1	Wheat	nucleus	49.19	54.09
HORVU5Hr1G106310.3	Barley	nucleus	49.51	49.04
GSMUA_Achr9P25560_001	Banana	nucleus	54.69	47.88
Bra011237.1-P	Field mustard	plastid	30.74	43.98
Bra020398.1-P	Field mustard	nucleus	34.3	37.86
Bra002679.1-P	Field mustard	nucleus	34.3	36.68
Bra006788.1-P	Field mustard	nucleus	33.01	34.0
Bra007863.1-P	Field mustard	nucleus	35.28	32.25
Bra032111.1-P	Field mustard	nucleus	34.95	31.03
Bra012133.1-P	Field mustard	nucleus, plastid	12.3	17.76
Bra037312.1-P	Field mustard	nucleus	11.0	16.27
Bra010591.1-P	Field mustard	nucleus, plastid	14.56	13.2
Bra011740.1-P	Field mustard	nucleus, plastid	14.24	12.43
Bra037742.1-P	Field mustard	nucleus	15.86	12.07
Bra004489.1-P	Field mustard	nucleus	15.53	12.0
Bra000283.1-P	Field mustard	nucleus	15.21	11.38
Bra000560.1-P	Field mustard	nucleus	14.24	11.34
Bra007430.1-P	Field mustard	nucleus	14.56	10.56
Bra003483.1-P	Field mustard	nucleus	10.36	10.42
Bra000436.1-P	Field mustard	nucleus	13.59	10.4
Bra031668.1-P	Field mustard	nucleus	14.56	9.15
Bra020017.1-P	Field mustard	nucleus	14.56	9.11
Bra011061.1-P	Field mustard	nucleus	13.27	7.93
Bra007660.1-P	Field mustard	nucleus	10.68	7.82
Bra011062.1-P	Field mustard	cytosol	11.0	7.42

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra000872	EnsemblPlants:Bra000872.1	EnsemblPlants:Bra000872.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006950	GO:GO:0008150	GO:GO:0009567
GO:GO:0031347	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4C9J3
PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF15	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000254059E	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

AT4G02590 (E=2e-123) UNE12 | UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor

Coordinates

chrA03:+:13625700..13627623

Molecular Weight (calculated)

32775.9 Da

IEP (calculated)

6.517

GRAVY (calculated)

-0.429

Length

309 amino acids

Sequence
(BLAST)

001: MASNNNPHEN LSDQTPSDDF FDQILGLPNF SASSSDGGLG GGGGGGAPPM MLQLGSGEEG SHMAGLVGGS GPSVFHNQMF PLGLSLDQGK GPVFLRPEGG
101: GVHATVNRSS SSSSSMKGPV FHGQPMQQPA PAAPHQPTSI RPRVRARRGQ ATDPHSIAER LRRERIAERI RALQELVPTV NKTDRAAMID EIVDYVKFLR
201: LQVKVLSMSR LGGAGAVAPL VTDMPLSSSV EDETSDGGRT PQPAWEKWSN DGTERQVAKL MEENVGAAMQ LLQSKALCMM PISLAMAIYH SQPPDTSSVV
301: KPETNPPPQ

Best Arabidopsis Sequence Match ( AT4G02590.2 )
(BLAST)

001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ

Arabidopsis Description

UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.