Factsheet for Bra020398.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32733	Canola	nucleus	96.79	89.74
Bra002679.1-P	Field mustard	nucleus	88.57	85.81
AT5G58010.1	Thale cress	nucleus	86.79	81.82
Bra006788.1-P	Field mustard	nucleus	86.79	81.0
Bra011237.1-P	Field mustard	plastid	41.79	54.17
Bra036256.1-P	Field mustard	nucleus	34.64	42.54
Bra018539.1-P	Field mustard	nucleus	33.93	37.4
Bra032111.1-P	Field mustard	nucleus	46.43	37.36
Bra007863.1-P	Field mustard	nucleus	45.0	37.28
Bra000872.1-P	Field mustard	nucleus	37.86	34.3
Bra033368.1-P	Field mustard	nucleus	36.43	32.8
GSMUA_Achr9P18080_001	Banana	nucleus	40.71	23.51
Zm00001d016873_P001	Maize	nucleus	39.64	22.7
Os06t0193400-01	Rice	nucleus	38.57	22.59
Bra012133.1-P	Field mustard	nucleus, plastid	16.79	21.96
KXG19523	Sorghum	nucleus	38.57	21.95
Zm00001d045046_P001	Maize	nucleus	37.5	21.83
KXG30460	Sorghum	nucleus	38.93	21.54
TraesCS7D01G158300.1	Wheat	nucleus	36.79	21.46
TraesCS7B01G062100.2	Wheat	nucleus	36.79	21.46
TraesCS7A01G157700.1	Wheat	nucleus	36.79	21.46
VIT_11s0016g00380.t01	Wine grape	nucleus	41.07	21.46
GSMUA_Achr3P10120_001	Banana	nucleus	41.43	21.28
HORVU7Hr1G032420.3	Barley	nucleus	36.07	21.0
Os02t0564700-01	Rice	nucleus	38.21	20.42
Zm00001d037098_P003	Maize	nucleus	37.86	20.35
Bra037312.1-P	Field mustard	nucleus	15.0	20.1
Bra010591.1-P	Field mustard	nucleus, plastid	18.93	15.54
Bra011740.1-P	Field mustard	nucleus, plastid	18.93	14.97
Bra000560.1-P	Field mustard	nucleus	19.29	13.92
Bra004489.1-P	Field mustard	nucleus	18.57	13.0
Bra000436.1-P	Field mustard	nucleus	18.21	12.62
Bra003483.1-P	Field mustard	nucleus	13.57	12.38
Bra000283.1-P	Field mustard	nucleus	17.5	11.86
Bra037742.1-P	Field mustard	nucleus	16.79	11.58
Bra007430.1-P	Field mustard	nucleus	17.14	11.27
Bra031668.1-P	Field mustard	nucleus	18.57	10.57
Bra020017.1-P	Field mustard	nucleus	18.57	10.53
Bra007660.1-P	Field mustard	nucleus	13.21	8.77
Bra011061.1-P	Field mustard	nucleus	14.64	7.93
Bra011062.1-P	Field mustard	cytosol	12.5	7.64

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra020398	EnsemblPlants:Bra020398.1	EnsemblPlants:Bra020398.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0030154	GO:GO:0046983
GO:GO:0080147	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4DV55	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF28	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002545CFC
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

AT5G58010 (E=2e-093) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA02:+:6550213..6551591

Molecular Weight (calculated)

29716.2 Da

IEP (calculated)

7.445

GRAVY (calculated)

-0.504

Length

280 amino acids

Sequence
(BLAST)

001: MGNENVERKG EFINQNNNDF FLDSMSMLSS LPPCWDSSLP PPHPPPPHAL TESGGPTIGS QDGLQGQGTV STTSAPVARQ KPRVRARRGQ ATDPHSIAER
101: LRRERIAERM KSLQELVPNT NKTDKASMLD EIIEYVRFLQ LQVKVLSMSR LGGAGAVGPR LNGLTSEVGG RLNALSGPCN GLNGKGNATG SSNESLRSTE
201: NRVAKLMEED MGSAMQYLQG KGLCLMPISL ATAMSSSSNN SRGALFNPKS NVLAAEEANV AAVAPPEDSS PMDDVSASKG

Best Arabidopsis Sequence Match ( AT5G58010.1 )
(BLAST)

001: MENGNGEGKG EFINQNNDFF LDSMSMLSSL PPCWDPSLPP PPPPPQSLFH ALAVDAPFPD QFHHPQESGG PTMGSQEGLQ PQGTVSTTSA PVVRQKPRVR
101: ARRGQATDPH SIAERLRRER IAERMKSLQE LVPNTNKTDK ASMLDEIIEY VRFLQLQVKV LSMSRLGGAG SVGPRLNGLS AEAGGRLNAL TAPCNGLNGN
201: GNATGSSNES LRSTEQRVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS SSTTHSRGSL FNPISSAVAA EDSNVTATAV AAPEASSTMD DVSASKA

Arabidopsis Description

BHLH82LRL3 [Source:UniProtKB/TrEMBL;Acc:A0A178UI77]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.