Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P10120_001 | Banana | nucleus | 78.76 | 70.09 |
| GSMUA_Achr9P11300_001 | Banana | nucleus | 6.39 | 49.21 |
| Os06t0193400-01 | Rice | nucleus | 43.92 | 44.56 |
| TraesCS7D01G158300.1 | Wheat | nucleus | 43.51 | 43.96 |
| TraesCS7B01G062100.2 | Wheat | nucleus | 43.3 | 43.75 |
| TraesCS7A01G157700.1 | Wheat | nucleus | 43.3 | 43.75 |
| Zm00001d045046_P001 | Maize | nucleus | 42.89 | 43.24 |
| HORVU7Hr1G032420.3 | Barley | nucleus | 42.27 | 42.62 |
| KXG19523 | Sorghum | nucleus | 43.09 | 42.48 |
| Bra020398.1-P | Field mustard | nucleus | 23.51 | 40.71 |
| Zm00001d037098_P003 | Maize | nucleus | 42.89 | 39.92 |
| CDY11836 | Canola | nucleus | 22.89 | 38.81 |
| CDY02785 | Canola | nucleus | 23.51 | 38.51 |
| Bra002679.1-P | Field mustard | nucleus | 22.89 | 38.41 |
| CDY55014 | Canola | nucleus | 22.89 | 38.41 |
| CDY32733 | Canola | nucleus | 23.51 | 37.75 |
| AT5G58010.1 | Thale cress | nucleus | 23.09 | 37.71 |
| Bra006788.1-P | Field mustard | nucleus | 23.09 | 37.33 |
| CDX88653 | Canola | nucleus | 23.09 | 37.33 |
| Zm00001d016873_P001 | Maize | nucleus | 37.32 | 37.01 |
| KXG30460 | Sorghum | nucleus | 38.56 | 36.96 |
| CDY62262 | Canola | nucleus | 22.89 | 36.76 |
| VIT_11s0016g00380.t01 | Wine grape | nucleus | 40.21 | 36.38 |
| GSMUA_Achr5P03100_001 | Banana | nucleus | 20.21 | 35.77 |
| Os02t0564700-01 | Rice | nucleus | 38.56 | 35.69 |
| GSMUA_Achr4P21070_001 | Banana | nucleus | 20.21 | 32.67 |
| GSMUA_Achr9P25560_001 | Banana | nucleus | 21.44 | 29.46 |
| GSMUA_Achr4P01910_001 | Banana | nucleus | 27.01 | 29.18 |
| GSMUA_Achr10P... | Banana | nucleus | 25.15 | 27.73 |
| GSMUA_Achr3P04630_001 | Banana | nucleus | 27.42 | 27.25 |
| GSMUA_Achr10P... | Banana | nucleus | 22.27 | 27.0 |
| GSMUA_Achr5P16470_001 | Banana | nucleus | 25.15 | 26.81 |
| GSMUA_Achr1P16830_001 | Banana | extracellular | 9.07 | 17.12 |
| GSMUA_Achr10P... | Banana | plastid | 10.93 | 15.45 |
| GSMUA_Achr6P31370_001 | Banana | nucleus | 11.13 | 14.52 |
| GSMUA_Achr8P15670_001 | Banana | nucleus | 10.52 | 14.45 |
| GSMUA_Achr6P30080_001 | Banana | nucleus | 11.34 | 13.72 |
| GSMUA_Achr5P02280_001 | Banana | nucleus | 12.16 | 10.85 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 12.78 | 10.46 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 11.96 | 9.68 |
| GSMUA_Achr4P31770_001 | Banana | nucleus | 11.75 | 9.61 |
| GSMUA_Achr5P18390_001 | Banana | nucleus | 11.55 | 9.24 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P18080_001 | EnsemblPlants:GSMUA_Achr9T18080_001 | EnsemblPlantsGene:GSMUA_Achr9G18080_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR16223 | PANTHER:PTHR16223:SF62 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002949BE5 | UniProt:M0U1B5 | MapMan:15.5.32 | : | : |
Description
PTF1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G18080_001]
Coordinates
chr9:-:12646787..12650214
Molecular Weight (calculated)
52154.9 Da
IEP (calculated)
5.952
GRAVY (calculated)
-0.346
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDLLNSFIS SPTWSDRNVS SKASWNNTSI PQTNVLLADY VESYGEVKNP SVCSVSSSNI VGNADAEDLN MHGHERTSSI LLDGKINYGI LKDLYSGERL
101: YHQILHCQTS NSVSLDNETQ VTTFSLEGVT DSNPTSASFE SALPHTTLAI SSSIGSTSSE LSAFPQSLVD AHSINSVPIV WPSSYSSVSS FIGHGNLPAF
201: SYQGHENHDD ILGKISLENG KFRDVKDQNE QHNFSSFSAG QQINLIPSAL QPQKEQNGLH SPCFPSGSSM MVLSKMAGMQ SPLQPSLLSE RHNASHHQIN
301: TSTGAQSQAV FANASGCNGA AKPRARARRG QATDPHSIAE RLRREKIAER MKNLQELVPS SNKTDKASML DEIIEYVKFL QLQVKVLSMS RLGATGAVVP
401: LLTDTQTEGS GSLLLWSSSV GQGGSDISES GDSLAFEKEV VKLMETNVTT AMQYLQHKGL CLMPIALATA ISTQKGSSST STPPD
101: YHQILHCQTS NSVSLDNETQ VTTFSLEGVT DSNPTSASFE SALPHTTLAI SSSIGSTSSE LSAFPQSLVD AHSINSVPIV WPSSYSSVSS FIGHGNLPAF
201: SYQGHENHDD ILGKISLENG KFRDVKDQNE QHNFSSFSAG QQINLIPSAL QPQKEQNGLH SPCFPSGSSM MVLSKMAGMQ SPLQPSLLSE RHNASHHQIN
301: TSTGAQSQAV FANASGCNGA AKPRARARRG QATDPHSIAE RLRREKIAER MKNLQELVPS SNKTDKASML DEIIEYVKFL QLQVKVLSMS RLGATGAVVP
401: LLTDTQTEGS GSLLLWSSSV GQGGSDISES GDSLAFEKEV VKLMETNVTT AMQYLQHKGL CLMPIALATA ISTQKGSSST STPPD
001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA
Arabidopsis Description
BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.