Factsheet for GSMUA_Achr10P24090_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72281	Soybean	nucleus, plastid	17.25	55.2
GSMUA_Achr5P16470_001	Banana	nucleus	62.75	55.16
GSMUA_Achr9P11300_001	Banana	nucleus	8.0	50.79
GSMUA_Achr4P01910_001	Banana	nucleus	53.0	47.22
GSMUA_Achr10P...	Banana	nucleus	50.0	45.45
GSMUA_Achr3P04630_001	Banana	nucleus	54.25	44.47
CDY46132	Canola	endoplasmic reticulum	19.25	43.75
CDY20290	Canola	endoplasmic reticulum, extracellular	22.0	43.35
GSMUA_Achr5P03100_001	Banana	nucleus	26.75	39.05
GSMUA_Achr4P21070_001	Banana	nucleus	29.25	39.0
CDY46133	Canola	nucleus	16.5	34.55
HORVU7Hr1G030250.5	Barley	nucleus	34.0	34.43
GSMUA_Achr9P25560_001	Banana	nucleus	29.0	32.86
HORVU5Hr1G065450.20	Barley	nucleus	36.25	31.12
GSMUA_Achr9P18080_001	Banana	nucleus	27.0	22.27
GSMUA_Achr3P10120_001	Banana	nucleus	28.5	20.92
GSMUA_Achr1P16830_001	Banana	extracellular	11.75	18.29
GSMUA_Achr8P15670_001	Banana	nucleus	13.5	15.3
GSMUA_Achr10P...	Banana	plastid	13.0	15.16
GSMUA_Achr6P31370_001	Banana	nucleus	12.75	13.71
GSMUA_Achr6P30080_001	Banana	nucleus	13.0	12.97
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	16.5	11.13
GSMUA_Achr5P18390_001	Banana	nucleus	16.5	10.89
GSMUA_Achr4P31770_001	Banana	nucleus	15.25	10.29
GSMUA_Achr5P02280_001	Banana	nucleus	13.25	9.74
GSMUA_Achr7P20810_001	Banana	nucleus	14.25	9.52

Protein Annotations

EnsemblPlants:GSMUA_Achr10P24090_001	EnsemblPlants:GSMUA_Achr10T24090_001	EnsemblPlantsGene:GSMUA_Achr10G24090_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR16223	PANTHER:PTHR16223:SF28	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI000296C874	UniProt:M0RKY4	MapMan:15.5.32	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G24090_001]

Coordinates

chr10:-:28547835..28550431

Molecular Weight (calculated)

42165.9 Da

IEP (calculated)

6.612

GRAVY (calculated)

-0.359

Length

400 amino acids

Sequence
(BLAST)

001: MQPSSKEMQA MVGGLPASAV AAHIALQELQ NGGGADHDDF LDQMMSGLAP AWQMGLGGYD DASLLTSRLR QHQAAGGGSP PPTGKSMLLQ LNHHHYSHHA
101: SPQQQLLLQS MGLPPAGGGG DSGGFLPLPL SLGSGGSRDS GLLFDRSREE VDAPFKSSDS TEAEALYNGL GESLQRAAQA PNHHHHFPHP QSLNVPRVRA
201: RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV KFLQLQVKAM PLSLSLSLSL SLSLSLSLSF SCYDSIQSRG ADGAAADDGL
301: TAAENQVTKL LEEDMGSAMQ YLQGKGLCLM PISLASAISS ATCHPRPPIP GGLSQLIRRT APSPHAAGDA PSSPSMSALT VQSTNGGGDA DVSRPSRCKD

Best Arabidopsis Sequence Match ( AT2G24260.2 )
(BLAST)

001: MNQQGQTQTQ TQPQASASTA TGGTVAAPPQ SRTKIRARRG QATDPHSIAE RLRRERIAER MKALQELVPN GNKTDKASML DEIIDYVKFL QLQVKVLSMS
101: RLGGAASVSS QISEAGGSHG NASSAMVGGS QTAGNSNDSV TMTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNPLI PGAVADVGGP
201: SPPNLSGMTI QSTSTKMGSG NGKLNGNGVT ERSSSIAVKE AVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.