Factsheet for GSMUA_Achr5P18390_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P11300_001	Banana	nucleus	6.77	65.08
KXG32305	Sorghum	nucleus	33.66	33.77
Zm00001d040536_P005	Maize	nucleus	30.53	32.63
Os01t0286100-01	Rice	nucleus	32.34	30.77
GSMUA_Achr1P16830_001	Banana	extracellular	13.04	30.74
GSMUA_Achr6P31370_001	Banana	nucleus	18.65	30.38
TraesCS1A01G083000.1	Wheat	nucleus	25.25	30.18
TraesCS1B01G100400.2	Wheat	nucleus	24.75	29.88
TraesCS1D01G084200.1	Wheat	nucleus	24.75	29.88
HORVU1Hr1G017900.1	Barley	nucleus	24.26	29.82
Os05t0139100-01	Rice	nucleus	24.75	29.7
Zm00001d024783_P001	Maize	nucleus	24.75	29.7
Zm00001d008205_P001	Maize	nucleus	31.19	29.62
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	28.38	29.01
GSMUA_Achr6P30080_001	Banana	nucleus	17.16	25.94
GSMUA_Achr5P02280_001	Banana	nucleus	21.45	23.9
GSMUA_Achr10P...	Banana	plastid	13.2	23.32
KXG21255	Sorghum	nucleus	26.24	23.11
GSMUA_Achr4P31770_001	Banana	nucleus	22.11	22.6
GSMUA_Achr8P15670_001	Banana	nucleus	12.71	21.81
GSMUA_Achr5P03100_001	Banana	nucleus	8.42	18.61
GSMUA_Achr4P21070_001	Banana	nucleus	8.91	18.0
GSMUA_Achr4P01910_001	Banana	nucleus	13.2	17.82
GSMUA_Achr10P...	Banana	nucleus	12.05	16.59
GSMUA_Achr10P...	Banana	nucleus	10.89	16.5
GSMUA_Achr5P16470_001	Banana	nucleus	11.72	15.6
GSMUA_Achr9P25560_001	Banana	nucleus	9.08	15.58
GSMUA_Achr3P04630_001	Banana	nucleus	12.54	15.57
GSMUA_Achr7P20810_001	Banana	nucleus	14.52	14.69
GSMUA_Achr9P18080_001	Banana	nucleus	9.24	11.55
GSMUA_Achr3P10120_001	Banana	nucleus	9.9	11.01

Protein Annotations

EnsemblPlants:GSMUA_Achr5P18390_001	EnsemblPlants:GSMUA_Achr5T18390_001	EnsemblPlantsGene:GSMUA_Achr5G18390_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI0002951777	UniProt:M0SZL8	MapMan:15.5.32	MapMan:26.1.1.4	:

Description

Putative Transcription factor PIF3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G18390_001]

Coordinates

chr5:+:19840174..19842848

Molecular Weight (calculated)

64705.3 Da

IEP (calculated)

5.422

GRAVY (calculated)

-0.506

Length

606 amino acids

Sequence
(BLAST)

001: MPLSEFYQAS ARKKFDAAQS NKMASRSSNR SSSMPDNEFV ELLWENGPVV MQGKSNRPRK TSIATTNFSL PADRAEGKDS TAIANMPKLG VLEAMDPFVS
101: NFSPSDPSGN AGIISTQFDN MVPWINYPIE EDPASSNYCS EFFSEISGIS MPANENNSFG HSTPYVEHGI VSKALEAGSC QSSLPSIMSR IENSPKKDVS
201: SMDLMNSSLF LRPGMKGKAN LQSVENSATA TASSNRIEST VIQSCSGLQS TSGIQGELNS VSSMLEMGSS AETPREIASV EPLEDVCEQD MPRKNLKSVI
301: EKDHEAIAAS SSVGSGNTAG TASGDPAQGA KRKNQGEECG NHKEDLEDAS TPSRKPDADA AKGRNAKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC
401: SKVDKASMLD EAIEYLKTLQ LQVQMMSMGS GLCMSPVMLP GGMQHLRVPP IAHFAQMGMN MTFGYGMGML NMNGSPGCSL VAAPPPMPGT QFPCSPLQAP
501: QGLYGMPRPT NLPMFAQGQA LPVPVPRVLP PFKSMSGLPA NLNSVPEAST TTTSNPSRAP DAETSSSFKD QKASASDSQG TKGSSQRCLS TPSISDDEPV
601: ELVNGT

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.