Factsheet for GSMUA_Achr5P02280_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P11300_001	Banana	nucleus	7.9	68.25
GSMUA_Achr4P31770_001	Banana	nucleus	60.48	55.48
GSMUA_Achr6P30080_001	Banana	nucleus	39.71	53.87
GSMUA_Achr6P31370_001	Banana	nucleus	26.47	38.71
TraesCS5A01G049600.1	Wheat	nucleus	22.43	36.31
TraesCS5B01G054800.2	Wheat	nucleus	22.43	35.99
HORVU5Hr1G011780.1	Barley	nucleus	21.69	34.6
TraesCS5D01G060300.1	Wheat	nucleus	21.88	34.0
Os12t0610200-01	Rice	nucleus	25.55	31.24
TraesCS5B01G380200.1	Wheat	nucleus	25.0	30.43
Zm00001d031044_P001	Maize	nucleus	21.69	29.57
GSMUA_Achr1P16830_001	Banana	extracellular	13.79	29.18
TraesCS5A01G376500.1	Wheat	nucleus	25.92	28.95
KXG23955	Sorghum	nucleus	24.82	28.42
OQU91282	Sorghum	nucleus	27.76	27.96
TraesCS5D01G386500.1	Wheat	nucleus	26.29	27.71
Zm00001d033267_P001	Maize	nucleus	27.57	27.37
HORVU5Hr1G093310.11	Barley	nucleus	27.02	26.87
GSMUA_Achr10P...	Banana	plastid	14.15	22.45
GSMUA_Achr8P15670_001	Banana	nucleus	14.34	22.1
GSMUA_Achr5P18390_001	Banana	nucleus	23.9	21.45
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	21.88	20.07
GSMUA_Achr5P03100_001	Banana	nucleus	9.01	17.88
GSMUA_Achr4P21070_001	Banana	nucleus	9.19	16.67
GSMUA_Achr4P01910_001	Banana	nucleus	13.05	15.81
GSMUA_Achr10P...	Banana	nucleus	12.5	15.45
GSMUA_Achr9P25560_001	Banana	nucleus	9.56	14.73
GSMUA_Achr3P04630_001	Banana	nucleus	12.87	14.34
GSMUA_Achr5P16470_001	Banana	nucleus	11.58	13.85
GSMUA_Achr7P20810_001	Banana	nucleus	14.89	13.52
GSMUA_Achr10P...	Banana	nucleus	9.74	13.25
GSMUA_Achr9P18080_001	Banana	nucleus	10.85	12.16
GSMUA_Achr3P10120_001	Banana	nucleus	11.58	11.56

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr5G02280_001	EnsemblPlants:GSMUA_Achr5P02280_001	EnsemblPlants:GSMUA_Achr5T02280_001	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M0SV07	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF194	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002962736	InterPro:bHLH_dom	SEG:seg

Description

Putative Transcription factor PIF1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G02280_001]

Coordinates

chr5:+:1450540..1454066

Molecular Weight (calculated)

60690.9 Da

IEP (calculated)

6.367

GRAVY (calculated)

-0.571

Length

544 amino acids

Sequence
(BLAST)

001: MNQYVPDWTM EDDSGRLTDL LPMTNQRKPM GPDNELVELL WRNGHVVMHS QTHRRTPVGE FKQASKPDPV QKYEQSLGDS SNLIQEAEAA SWFQFPLDDS
101: FEKEFCSEFF PEITGTDTVV SEKISKDFTA EEEDRYLKFG FTDDGTAFTA PAPKQSVPHP QDNIMPPPRS HVMGSTPQSS SLENSNSGAG AQESSMMTVG
201: SSACGSNQIQ AQTDPSNNIS NDAADIVTRL REGTGMRLLS ERMQSKAHEG TVTSSSGGSG CSYGRSAQQN ESNHSHKRRK ARDVEESGCQ SEEAEYESID
301: EKKQATRPTS KRRSRAAEVH NLSERRRRDR INEKMKALQE LIPHCNKTDK ASMLDEAIEY LKTLQLQVQM MWMGSGMASM MFPCVQQYIS GMGMGIGMSH
401: ASMSAIHSAV QLPRVPFQTF PARCRTFIFP NHMPGTLVFI TFVHMDRTWC SIINQQHHLI PLSRLLPEDL QVSGTTNLIK GGTSNLESAL LFISDNSLWT
501: CRGVGAAMIR GQKIGIDRSP CCLLLVNPPD HLLKPEIVMY ITRE

Best Arabidopsis Sequence Match ( AT2G43010.4 )
(BLAST)

001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQVRPIR
401: SRVY

Arabidopsis Description

PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.