Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G376500.1 | Wheat | nucleus | 82.82 | 93.02 |
| TraesCS5B01G380200.1 | Wheat | nucleus | 74.41 | 91.05 |
| TraesCS5D01G386500.1 | Wheat | nucleus | 82.63 | 87.6 |
| OQU91282 | Sorghum | nucleus | 61.24 | 62.04 |
| Zm00001d033267_P001 | Maize | nucleus | 60.69 | 60.58 |
| HORVU5Hr1G011780.1 | Barley | nucleus | 29.98 | 48.09 |
| GSMUA_Achr6P31370_001 | Banana | nucleus | 21.94 | 32.26 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 10.05 | 29.26 |
| GSMUA_Achr6P30080_001 | Banana | nucleus | 21.39 | 29.18 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 20.84 | 28.79 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 18.28 | 27.62 |
| GSMUA_Achr5P02280_001 | Banana | nucleus | 26.87 | 27.02 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 13.35 | 24.66 |
| GSMUA_Achr4P31770_001 | Banana | nucleus | 24.86 | 22.93 |
| HORVU7Hr1G026560.2 | Barley | nucleus | 13.53 | 21.89 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 19.01 | 21.1 |
| HORVU6Hr1G085500.3 | Barley | nucleus | 11.7 | 17.68 |
| HORVU7Hr1G030250.5 | Barley | nucleus | 12.61 | 17.47 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 14.81 | 17.46 |
| HORVU5Hr1G106310.3 | Barley | nucleus | 9.32 | 16.35 |
| HORVU5Hr1G065450.20 | Barley | nucleus | 11.33 | 13.3 |
| HORVU7Hr1G032420.3 | Barley | nucleus | 10.05 | 11.43 |
Protein Annotations
| EMBL:AK362162 | EnsemblPlants:HORVU5Hr1G093310.11 | EnsemblPlantsGene:HORVU5Hr1G093310 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000B477A91 | UniProt:A0A287SA14 | MapMan:15.5.32 | MapMan:26.1.1.4 | : |
Description
No Description!
Coordinates
chrchr5H:-:591356024..591361784
Molecular Weight (calculated)
58335.4 Da
IEP (calculated)
7.134
GRAVY (calculated)
-0.577
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQFVPDWGN MGDISRPLGE DDDLMELLWC NGNVVMQSQG HRKLPPRPEK VPAPAVVQED EAGLWFPFAL ADSLDKDIFT DLFCEEPPGA AVVDGAGKAG
101: RGDGAPLLGD VDGRSSQSSA VSAASDLMPP PKSTHTHVSC SSRQQSMSLA DCGDNAGGVV SGLVQARAGK AAMEEGASST LSAIGASFCG SNQVQVQGAV
201: SEQGRAGHTT VYGGRGAGSA LPSAVGSGNA NASGRGHEAT VASSSGRSNY CFGAAATTTT TTTGTEPTST SNRSSKRKRG LDTEDSESPS EDAESESLAL
301: DRKPPQKLTT ARRSRAAEVH NLSERRRRDR INEKMRALQE LIPHCNKTDK ASMLDEAIEY LKTLQMQVQM MWMGGGMAAP PAVMFPGMHQ YLPQMGPASM
401: ARMPFMAPQQ QGSLPEQYAH FLGVNHHHLQ PPAHHHHHQH FAQGVGYYPL GPKALQQSPA LHHVPNGSGT PAATANTAPG NAIHPNKRTG NYENEIRGTI
501: KWKGTAAAQQ QQVQQYIHGA EETLMGTKFF HLLPPLRSRQ ENCSKSW
101: RGDGAPLLGD VDGRSSQSSA VSAASDLMPP PKSTHTHVSC SSRQQSMSLA DCGDNAGGVV SGLVQARAGK AAMEEGASST LSAIGASFCG SNQVQVQGAV
201: SEQGRAGHTT VYGGRGAGSA LPSAVGSGNA NASGRGHEAT VASSSGRSNY CFGAAATTTT TTTGTEPTST SNRSSKRKRG LDTEDSESPS EDAESESLAL
301: DRKPPQKLTT ARRSRAAEVH NLSERRRRDR INEKMRALQE LIPHCNKTDK ASMLDEAIEY LKTLQMQVQM MWMGGGMAAP PAVMFPGMHQ YLPQMGPASM
401: ARMPFMAPQQ QGSLPEQYAH FLGVNHHHLQ PPAHHHHHQH FAQGVGYYPL GPKALQQSPA LHHVPNGSGT PAATANTAPG NAIHPNKRTG NYENEIRGTI
501: KWKGTAAAQQ QQVQQYIHGA EETLMGTKFF HLLPPLRSRQ ENCSKSW
001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
Arabidopsis Description
PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.