Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G068110.1 | |
| HORVU7Hr1G054880.1 | |
| HORVU7Hr1G077270.3 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G126900.1 | Wheat | nucleus | 92.31 | 94.26 |
| TraesCS7D01G124700.1 | Wheat | nucleus | 93.79 | 93.79 |
| TraesCS7B01G026300.1 | Wheat | nucleus | 92.31 | 92.04 |
| OQU75890 | Sorghum | nucleus | 60.65 | 70.45 |
| TraesCS6A01G190600.1 | Wheat | nucleus | 25.44 | 66.67 |
| Os06t0164400-01 | Rice | cytosol, mitochondrion, nucleus | 35.5 | 60.91 |
| CDY37185 | Canola | mitochondrion | 16.86 | 58.16 |
| Zm00001d045212_P001 | Maize | nucleus | 58.28 | 58.11 |
| KRH04595 | Soybean | nucleus | 30.47 | 37.87 |
| KRH04711 | Soybean | plastid | 16.57 | 35.0 |
| CDY24734 | Canola | plastid | 14.2 | 33.8 |
| KRH28453 | Soybean | nucleus | 28.7 | 33.33 |
| Bra012133.1-P | Field mustard | nucleus, plastid | 20.71 | 32.71 |
| CDY12804 | Canola | nucleus, plastid | 20.71 | 32.41 |
| CDY01438 | Canola | nucleus, plastid | 20.71 | 32.11 |
| AT5G67110.1 | Thale cress | nucleus | 19.82 | 31.9 |
| Solyc04g078690.2.1 | Tomato | nucleus | 28.7 | 30.89 |
| PGSC0003DMT400020534 | Potato | nucleus | 28.4 | 30.57 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 26.63 | 30.41 |
| VIT_07s0031g00450.t01 | Wine grape | nucleus, plastid | 34.62 | 29.7 |
| KRH05665 | Soybean | nucleus | 25.74 | 29.29 |
| KRH77016 | Soybean | nucleus | 32.25 | 29.07 |
| Bra010591.1-P | Field mustard | nucleus, plastid | 29.29 | 29.03 |
| CDY44048 | Canola | nucleus, plastid | 29.29 | 29.03 |
| KRH15381 | Soybean | nucleus | 24.85 | 28.28 |
| CDY22448 | Canola | nucleus, plastid | 28.99 | 27.84 |
| VIT_18s0001g10270.t01 | Wine grape | nucleus | 30.18 | 27.64 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 14.79 | 26.6 |
| PGSC0003DMT400010253 | Potato | nucleus | 29.59 | 26.6 |
| CDX75629 | Canola | nucleus | 27.22 | 26.59 |
| AT4G36930.1 | Thale cress | nucleus | 29.29 | 26.54 |
| Bra011740.1-P | Field mustard | nucleus, plastid | 27.51 | 26.27 |
| Solyc02g093280.2.1 | Tomato | nucleus | 29.29 | 26.19 |
| CDX69281 | Canola | nucleus, plastid | 26.63 | 25.79 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 19.53 | 18.23 |
| HORVU5Hr1G011780.1 | Barley | nucleus | 17.75 | 17.6 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 19.82 | 16.92 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 27.51 | 15.53 |
| HORVU6Hr1G085500.3 | Barley | nucleus | 16.27 | 15.19 |
| HORVU1Hr1G054260.3 | Barley | nucleus | 18.64 | 13.58 |
| HORVU5Hr1G093310.11 | Barley | nucleus | 21.89 | 13.53 |
| HORVU5Hr1G106310.3 | Barley | nucleus | 12.43 | 13.46 |
| HORVU7Hr1G030250.5 | Barley | nucleus | 15.38 | 13.16 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 18.05 | 12.37 |
| HORVU5Hr1G065450.20 | Barley | nucleus | 14.5 | 10.52 |
| HORVU7Hr1G032420.3 | Barley | nucleus | 13.61 | 9.56 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G026560.2 | EnsemblPlantsGene:HORVU7Hr1G026560 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF297 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000B46EC74 | UniProt:A0A287VSQ5 | MapMan:15.5.32 | : | : |
Description
No Description!
Coordinates
chrchr7H:-:45863743..45867483
Molecular Weight (calculated)
36570.8 Da
IEP (calculated)
7.052
GRAVY (calculated)
-0.764
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEQRDGGF GGGGGGAVRE LVLMQQERRR RREEEEEEVR RQMFGGGAAF HAAAAAAALG QQQHHHQAAE YGDIGAGAGG AFYESEAGGS SEPEPHGTSD
101: RPRGGGGSGS KRTRAAEVHN LSEKRRRSRI NEKMKALQSL IPNSNKTDKA SMLDEAIEYL KQLQLQVQML SMRNGVYLNP SYLSGALEPV QASQMFAALG
201: ASGRNVAAPS SGAVAPPVNQ SSGAHLSFDP MNSPQQNQPQ PLVLASCPKT TIPEPPFHLE SSQSHLQSFQ LPESSQMMLR GDIMLKHHLT SAQERADPPG
301: NKMNSLRQES TMLNTHFDGC SRSKEQSHDM VPANTRHV
101: RPRGGGGSGS KRTRAAEVHN LSEKRRRSRI NEKMKALQSL IPNSNKTDKA SMLDEAIEYL KQLQLQVQML SMRNGVYLNP SYLSGALEPV QASQMFAALG
201: ASGRNVAAPS SGAVAPPVNQ SSGAHLSFDP MNSPQQNQPQ PLVLASCPKT TIPEPPFHLE SSQSHLQSFQ LPESSQMMLR GDIMLKHHLT SAQERADPPG
301: NKMNSLRQES TMLNTHFDGC SRSKEQSHDM VPANTRHV
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
Arabidopsis Description
SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.