Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os08t0108500-01 | |
| Os09t0455300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36930.1 | Os09t0455300-01 | AT3G50330.1 | 17855426 |
| AT4G36930.1 | Os08t0108500-01 | AT5G09750.1 | 17855426 |
| AT4G36930.1 | Os09t0455300-01 | AT5G67060.1 | 17855426 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G190600.1 | Wheat | nucleus | 37.06 | 56.59 |
| CDY37185 | Canola | mitochondrion | 26.4 | 53.06 |
| TraesCS7A01G126900.1 | Wheat | nucleus | 61.93 | 36.86 |
| OQU75890 | Sorghum | nucleus | 54.31 | 36.77 |
| TraesCS7B01G026300.1 | Wheat | nucleus | 61.93 | 35.99 |
| TraesCS7D01G124700.1 | Wheat | nucleus | 61.42 | 35.8 |
| HORVU7Hr1G026560.2 | Barley | nucleus | 60.91 | 35.5 |
| CDY24734 | Canola | plastid | 24.87 | 34.51 |
| KRH04711 | Soybean | plastid | 27.92 | 34.38 |
| Zm00001d045212_P001 | Maize | nucleus | 57.36 | 33.33 |
| Bra012133.1-P | Field mustard | nucleus, plastid | 31.47 | 28.97 |
| CDY12804 | Canola | nucleus, plastid | 31.47 | 28.7 |
| AT5G67110.1 | Thale cress | nucleus | 30.46 | 28.57 |
| CDY01438 | Canola | nucleus, plastid | 30.96 | 27.98 |
| KRH04595 | Soybean | nucleus | 33.5 | 24.26 |
| Os04t0618600-01 | Rice | nucleus | 21.32 | 23.2 |
| Os02t0805250-00 | Rice | nucleus | 31.98 | 22.5 |
| PGSC0003DMT400020534 | Potato | nucleus | 35.53 | 22.29 |
| Solyc04g078690.2.1 | Tomato | nucleus | 35.03 | 21.97 |
| KRH28453 | Soybean | nucleus | 31.47 | 21.31 |
| KRH05665 | Soybean | nucleus | 31.98 | 21.21 |
| KRH15381 | Soybean | nucleus | 31.47 | 20.88 |
| CDY44048 | Canola | nucleus, plastid | 35.03 | 20.23 |
| Bra010591.1-P | Field mustard | nucleus, plastid | 35.03 | 20.23 |
| CDX75629 | Canola | nucleus | 35.03 | 19.94 |
| Bra011740.1-P | Field mustard | nucleus, plastid | 35.53 | 19.77 |
| CDX69281 | Canola | nucleus, plastid | 35.03 | 19.77 |
| CDY22448 | Canola | nucleus, plastid | 35.03 | 19.6 |
| AT4G36930.1 | Thale cress | nucleus | 36.55 | 19.3 |
| KRH77016 | Soybean | nucleus | 36.55 | 19.2 |
| VIT_07s0031g00450.t01 | Wine grape | nucleus, plastid | 38.07 | 19.04 |
| VIT_18s0001g10270.t01 | Wine grape | nucleus | 34.52 | 18.43 |
| PGSC0003DMT400010253 | Potato | nucleus | 34.52 | 18.09 |
| Solyc02g093280.2.1 | Tomato | nucleus | 34.52 | 17.99 |
| Os07t0182200-01 | Rice | cytosol | 11.68 | 16.91 |
| Os03t0782500-01 | Rice | nucleus | 28.93 | 13.9 |
| Os12t0610200-01 | Rice | nucleus | 29.95 | 13.26 |
| Os07t0143200-01 | Rice | nucleus | 26.4 | 12.56 |
| Os10t0556200-01 | Rice | nucleus | 29.44 | 12.47 |
| Os03t0797600-01 | Rice | nucleus | 16.75 | 11.22 |
| Os06t0184000-00 | Rice | nucleus | 22.34 | 11.06 |
| Os05t0139100-01 | Rice | nucleus | 27.92 | 10.89 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 32.99 | 10.85 |
| Os01t0286100-01 | Rice | nucleus | 29.95 | 9.26 |
| Os02t0795800-00 | Rice | endoplasmic reticulum, mitochondrion, nucleus, plastid | 12.69 | 8.93 |
| Os06t0193400-01 | Rice | nucleus | 19.8 | 8.16 |
| Os02t0564700-01 | Rice | nucleus | 21.32 | 8.02 |
| Os03t0639300-01 | Rice | nucleus | 4.06 | 2.61 |
Protein Annotations
| EnsemblPlants:Os06t0164400-01 | EnsemblPlantsGene:Os06g0164400 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | ncoils:Coil | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF297 | PFAM:PF00010 | PFscan:PS50888 | ProteinID:BAS96317.1 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI000393BA92 | UniProt:A0A0P0WTF9 | MapMan:15.5.32 | : | : |
Description
basic helix-loop-helix protein 108, OsSPATULA, SPATULASimilar to predicted protein. (Os06t0164400-01)
Coordinates
chr6:+:3273390..3276888
Molecular Weight (calculated)
21871.9 Da
IEP (calculated)
7.799
GRAVY (calculated)
-0.628
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEQRGRGGF DELVLLHQQQ EQRRRREQQQ EEEEEEEVRR QMFGAVVGGL AAFPAAAAAL GQQQVDCGGE LGGFCDSEAG GSSEPEAAAG ARPRGGSGSK
101: RSRAAEVHNL SEKRRRSKIN EKMKALQSLI PNSNKVIRRK KATFNFNVHE LGFCWVCAGN LSVFVCWFCG LQTDKASMLD EAIEYLKQLQ LQVQVSR
101: RSRAAEVHNL SEKRRRSKIN EKMKALQSLI PNSNKVIRRK KATFNFNVHE LGFCWVCAGN LSVFVCWFCG LQTDKASMLD EAIEYLKQLQ LQVQVSR
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
Arabidopsis Description
SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.