Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P11300_001 | Banana | nucleus | 11.93 | 74.6 |
| KRH28453 | Soybean | nucleus | 38.32 | 51.89 |
| KRH04595 | Soybean | nucleus | 35.53 | 51.47 |
| TraesCS6A01G190600.1 | Wheat | nucleus | 16.24 | 49.61 |
| KRH77016 | Soybean | nucleus | 46.95 | 49.33 |
| VIT_18s0001g10270.t01 | Wine grape | nucleus | 40.1 | 42.82 |
| OQU75890 | Sorghum | nucleus | 28.68 | 38.83 |
| Os06t0164400-01 | Rice | cytosol, mitochondrion, nucleus | 19.04 | 38.07 |
| GSMUA_Achr10P... | Banana | plastid | 31.73 | 36.44 |
| TraesCS7A01G126900.1 | Wheat | nucleus | 29.95 | 35.65 |
| GSMUA_Achr8P15670_001 | Banana | nucleus | 31.47 | 35.13 |
| TraesCS7D01G124700.1 | Wheat | nucleus | 29.95 | 34.91 |
| HORVU7Hr1G026560.2 | Barley | nucleus | 29.7 | 34.62 |
| TraesCS7B01G026300.1 | Wheat | nucleus | 29.7 | 34.51 |
| Os02t0805250-00 | Rice | nucleus | 24.11 | 33.93 |
| Zm00001d045212_P001 | Maize | nucleus | 28.68 | 33.33 |
| KXG31309 | Sorghum | nucleus | 24.62 | 33.22 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 15.74 | 31.0 |
| TraesCS6D01G357700.1 | Wheat | nucleus | 23.1 | 30.64 |
| HORVU6Hr1G088020.4 | Barley | nucleus | 22.59 | 30.07 |
| TraesCS6A01G373500.2 | Wheat | nucleus | 22.59 | 29.37 |
| TraesCS6B01G411300.1 | Wheat | nucleus | 21.83 | 28.38 |
| Zm00001d018416_P001 | Maize | mitochondrion | 23.6 | 28.18 |
| VIT_17s0000g06930.t01 | Wine grape | nucleus | 21.83 | 20.33 |
| GSMUA_Achr7P20810_001 | Banana | nucleus | 27.16 | 17.86 |
| VIT_07s0141g00220.t01 | Wine grape | nucleus | 12.44 | 16.95 |
| VIT_15s0021g02690.t01 | Wine grape | nucleus | 19.8 | 16.77 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 23.6 | 16.67 |
| VIT_05s0020g04620.t01 | Wine grape | nucleus | 12.94 | 16.29 |
| VIT_07s0005g05100.t01 | Wine grape | mitochondrion, nucleus | 19.04 | 16.23 |
| VIT_14s0030g02230.t01 | Wine grape | nucleus | 12.94 | 15.41 |
| VIT_14s0060g00260.t01 | Wine grape | nucleus | 26.4 | 14.67 |
| VIT_11s0037g00040.t01 | Wine grape | nucleus | 17.26 | 13.49 |
| VIT_11s0016g00380.t01 | Wine grape | nucleus | 14.97 | 11.01 |
Protein Annotations
| EntrezGene:100245665 | wikigene:100245665 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:CBI21410 | ProteinID:CBI21410.3 |
| ncoils:Coil | UniProt:D7SVW1 | EMBL:FN595233 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100245665 | wikigene:LOC100245665 |
| PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF306 | SMART:SM00353 | SUPFAM:SSF47459 |
| UniParc:UPI0001BE1915 | ArrayExpress:VIT_07s0031g00450 | EnsemblPlantsGene:VIT_07s0031g00450 | EnsemblPlants:VIT_07s0031g00450.t01 | unigene:Vvi.11604 | RefSeq:XP_002277966 |
| RefSeq:XP_002277966.2 | InterPro:bHLH_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7:+:16661373..16668053
Molecular Weight (calculated)
43211.9 Da
IEP (calculated)
4.946
GRAVY (calculated)
-0.493
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQYTKPCS SSPVPPSSAS EPDEISLFLH QILFRSSSSS STTSLHNAKL MPSEFLSENP LRQCRSPLIS SSDRLVRDGM NSSTGVYFPV SAGTASSSAG
101: GFDNDLDEYD CESEEGLEAL VEEVATKAAP LRSSSKRSRA AEVHNLSEKR RRSRINEKMK ALQNLIPNSN KTDKASMLDE AIEYLKQLQL QVQMLSMRNG
201: LSLHPMCLPG VLPPVQLSQM RIGIGEENGS LHMDMTGTLP VNQETMEYRL ANQGTSSSHP SVPNLTDIMN SETSFGLESS IQAHLGPFQL QTSSADICRE
301: DVLPHQQLNI SCAGTNSLEL KMETTITVSL PYDAQASGVK DSNTLESCIQ RRDLSEGMLL KNIEHNQVPF PQLNGMHTGR SVPNDDMKTD RLDF
101: GFDNDLDEYD CESEEGLEAL VEEVATKAAP LRSSSKRSRA AEVHNLSEKR RRSRINEKMK ALQNLIPNSN KTDKASMLDE AIEYLKQLQL QVQMLSMRNG
201: LSLHPMCLPG VLPPVQLSQM RIGIGEENGS LHMDMTGTLP VNQETMEYRL ANQGTSSSHP SVPNLTDIMN SETSFGLESS IQAHLGPFQL QTSSADICRE
301: DVLPHQQLNI SCAGTNSLEL KMETTITVSL PYDAQASGVK DSNTLESCIQ RRDLSEGMLL KNIEHNQVPF PQLNGMHTGR SVPNDDMKTD RLDF
001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT
Arabidopsis Description
SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.