Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_17s0000g06570.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G46970.1 | VIT_17s0000g06570.t01 | AT5G61380.1 | 11828029 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH69138 | Soybean | cytosol, nucleus, vacuole | 23.5 | 26.11 |
| Bra003483.1-P | Field mustard | nucleus | 25.5 | 16.61 |
| CDX67873 | Canola | nucleus | 25.5 | 16.61 |
| VIT_18s0001g10270.t01 | Wine grape | nucleus | 29.5 | 15.99 |
| VIT_07s0031g00450.t01 | Wine grape | nucleus, plastid | 31.0 | 15.74 |
| VIT_07s0141g00220.t01 | Wine grape | nucleus | 22.5 | 15.57 |
| CDY65446 | Canola | nucleus | 25.5 | 15.41 |
| VIT_14s0060g00260.t01 | Wine grape | nucleus | 53.5 | 15.09 |
| Zm00001d024783_P001 | Maize | nucleus | 37.5 | 14.85 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 36.0 | 14.6 |
| KRH33663 | Soybean | nucleus | 32.5 | 14.48 |
| Zm00001d040536_P005 | Maize | nucleus | 41.0 | 14.46 |
| Os05t0139100-01 | Rice | nucleus | 36.5 | 14.46 |
| PGSC0003DMT400047079 | Potato | nucleus | 51.0 | 14.41 |
| KXG32305 | Sorghum | nucleus | 43.5 | 14.4 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 36.0 | 14.34 |
| CDX80064 | Canola | nucleus | 28.5 | 14.25 |
| Bra004489.1-P | Field mustard | nucleus | 28.5 | 14.25 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 36.0 | 14.2 |
| CDX94963 | Canola | nucleus | 35.0 | 14.06 |
| CDY22636 | Canola | nucleus | 34.5 | 14.05 |
| Bra031668.1-P | Field mustard | nucleus | 34.5 | 14.02 |
| Solyc01g102300.2.1 | Tomato | nucleus | 50.0 | 13.99 |
| Bra020017.1-P | Field mustard | nucleus | 34.5 | 13.97 |
| TraesCS1B01G100400.2 | Wheat | nucleus | 35.0 | 13.94 |
| CDY06358 | Canola | nucleus | 34.0 | 13.85 |
| CDY66254 | Canola | nucleus | 27.5 | 13.75 |
| CDY64745 | Canola | nucleus | 34.5 | 13.74 |
| VIT_17s0000g06930.t01 | Wine grape | nucleus | 29.0 | 13.71 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 40.5 | 13.66 |
| KRH68390 | Soybean | nucleus | 42.5 | 13.62 |
| AT3G62090.2 | Thale cress | nucleus | 24.5 | 13.5 |
| AT2G46970.1 | Thale cress | nucleus | 28.0 | 13.46 |
| VIT_05s0020g04620.t01 | Wine grape | nucleus | 21.0 | 13.42 |
| Os01t0286100-01 | Rice | nucleus | 42.5 | 13.34 |
| CDX83349 | Canola | nucleus | 26.5 | 13.12 |
| Bra000436.1-P | Field mustard | nucleus | 26.5 | 13.12 |
| Zm00001d008205_P001 | Maize | nucleus | 41.5 | 13.01 |
| VIT_14s0030g02230.t01 | Wine grape | nucleus | 21.5 | 12.99 |
| AT1G09530.3 | Thale cress | nucleus | 34.0 | 12.98 |
| CDY50911 | Canola | nucleus | 17.5 | 12.92 |
| CDX76616 | Canola | extracellular | 23.0 | 12.85 |
| CDY11401 | Canola | extracellular | 22.0 | 12.5 |
| KRG96663 | Soybean | nucleus | 39.0 | 12.32 |
| KRH68348 | Soybean | nucleus | 31.5 | 12.19 |
| VIT_15s0021g02690.t01 | Wine grape | nucleus | 27.0 | 11.61 |
| KRG96615 | Soybean | nucleus | 29.0 | 11.2 |
| VIT_07s0005g05100.t01 | Wine grape | mitochondrion, nucleus | 25.5 | 11.04 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 30.5 | 10.93 |
| KXG21255 | Sorghum | nucleus | 37.0 | 10.76 |
| Bra007660.1-P | Field mustard | nucleus | 22.5 | 10.66 |
| VIT_11s0037g00040.t01 | Wine grape | nucleus | 24.5 | 9.72 |
| VIT_11s0016g00380.t01 | Wine grape | nucleus | 20.0 | 7.46 |
Protein Annotations
| EntrezGene:100253874 | wikigene:100253874 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ProteinID:CBI37047 | ProteinID:CBI37047.3 |
| UniProt:D7U2T1 | EMBL:FN596502 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | EntrezGene:LOC100253874 | wikigene:LOC100253874 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF284 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0001BE4790 |
| ArrayExpress:VIT_07s0005g02510 | EnsemblPlantsGene:VIT_07s0005g02510 | EnsemblPlants:VIT_07s0005g02510.t01 | RefSeq:XP_002273729 | RefSeq:XP_002273729.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:4866937..4867836
Molecular Weight (calculated)
20893.9 Da
IEP (calculated)
10.120
GRAVY (calculated)
-0.003
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTRGGSAGS KRNRSAEGHS LSEKRRRDRI NKKMRSLQEL IPNCKKVDKI SILDEAIDYL KTLQLQVQVM SMGAGMCMAP VMIPAVLQQI QAAHLPHFSP
101: MGMGMGMGMG MGLGLGLGLG LGCSPEQFPS PPILGAAALS GIAGTAPQML GHPGQVLPMS LSSAPFIPLH AGSLTQSVLV PSVPKDIHPV EHPGSSPSSN
101: MGMGMGMGMG MGLGLGLGLG LGCSPEQFPS PPILGAAALS GIAGTAPQML GHPGQVLPMS LSSAPFIPLH AGSLTQSVLV PSVPKDIHPV EHPGSSPSSN
001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
Arabidopsis Description
PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.