Factsheet for Zm00001d008205_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003811_P001
Zm00001d005366_P001
Zm00001d017241_P002
Zm00001d018818_P001
Zm00001d043140_P001
Zm00001d044406_P001
Zm00001d051114_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46970.1	Zm00001d003811_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d005366_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d017241_P002	AT5G61380.1	11828029
AT2G46970.1	Zm00001d018818_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d043140_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d044406_P001	AT5G61380.1	11828029
AT2G46970.1	Zm00001d051114_P001	AT5G61380.1	11828029

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32305	Sorghum	nucleus	76.8	81.13
Zm00001d040536_P005	Maize	nucleus	67.71	76.19
Os01t0286100-01	Rice	nucleus	61.91	62.01
Zm00001d024783_P001	Maize	nucleus	36.05	45.54
VIT_07s0005g02510.t01	Wine grape	nucleus	13.01	41.5
KRH69138	Soybean	cytosol, nucleus, vacuole	9.25	32.78
GSMUA_Achr5P18390_001	Banana	nucleus	29.62	31.19
Zm00001d002288_P002	Maize	nucleus	9.56	28.5
Bra020017.1-P	Field mustard	nucleus	21.0	27.13
CDX94963	Canola	nucleus	21.16	27.11
Zm00001d026317_P003	Maize	nucleus, plastid	10.03	27.0
VIT_14s0060g00260.t01	Wine grape	nucleus	29.94	26.94
KRH33733	Soybean	nucleus	29.15	26.92
CDY06358	Canola	nucleus	20.69	26.88
Bra031668.1-P	Field mustard	nucleus	20.69	26.83
CDY64745	Canola	nucleus	21.0	26.69
CDY22636	Canola	nucleus	20.38	26.48
KRG90443	Soybean	nucleus	29.62	26.18
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	23.82	25.63
AT1G09530.3	Thale cress	nucleus	20.85	25.38
Zm00001d031044_P001	Maize	nucleus	15.83	25.31
Zm00001d034298_P001	Maize	nucleus	16.61	25.12
Zm00001d033267_P001	Maize	nucleus	21.47	25.0
KRH68390	Soybean	nucleus	24.45	25.0
Solyc01g102300.2.1	Tomato	nucleus	27.59	24.62
Zm00001d018416_P001	Maize	mitochondrion	12.7	24.55
KRG96663	Soybean	nucleus	24.14	24.33
PGSC0003DMT400047079	Potato	nucleus	26.65	24.01
Zm00001d045212_P001	Maize	nucleus	12.38	23.3
KRH33663	Soybean	nucleus	16.3	23.16
CDX67873	Canola	nucleus	11.13	23.13
Bra003483.1-P	Field mustard	nucleus	11.13	23.13
CDX80064	Canola	nucleus	14.11	22.5
Bra004489.1-P	Field mustard	nucleus	14.11	22.5
Zm00001d013130_P001	Maize	nucleus	13.64	22.48
AT2G46970.1	Thale cress	nucleus	14.58	22.36
AT3G62090.2	Thale cress	nucleus	12.54	22.04
CDY65446	Canola	nucleus	11.13	21.45
KRH68348	Soybean	nucleus	17.24	21.28
CDY66254	Canola	nucleus	13.32	21.25
Bra000436.1-P	Field mustard	nucleus	13.17	20.79
CDX83349	Canola	nucleus	13.17	20.79
Zm00001d020490_P001	Maize	nucleus	10.81	20.06
KRG96615	Soybean	nucleus	16.14	19.88
CDY50911	Canola	nucleus	8.15	19.19
Zm00001d013073_P002	Maize	nucleus	8.46	18.95
CDY11401	Canola	extracellular	10.34	18.75
CDX76616	Canola	extracellular	10.5	18.72
Zm00001d018967_P001	Maize	nucleus	8.31	18.6
Zm00001d029898_P001	Maize	nucleus	13.79	17.96
Zm00001d005750_P002	Maize	mitochondrion	11.29	17.6
Zm00001d018374_P001	Maize	nucleus	10.66	17.48
Zm00001d052038_P001	Maize	nucleus	9.09	17.37
Zm00001d000291_P001	Maize	nucleus	12.38	16.84
Zm00001d045107_P001	Maize	nucleus	8.31	15.96
Bra007660.1-P	Field mustard	nucleus	10.34	15.64
Zm00001d016873_P001	Maize	nucleus	10.19	13.29
Zm00001d045046_P001	Maize	nucleus	8.93	11.85
Zm00001d037098_P003	Maize	nucleus	8.93	10.94
Zm00001d029897_P001	Maize	nucleus	3.61	8.42

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	ProteinID:AQK89187.1	EMBL:BT084779	UniProt:C4J1T2
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598
InterPro:IPR036638	EMBL:KJ726959	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF284
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0001A4C3B5	EnsemblPlantsGene:Zm00001d008205	EnsemblPlants:Zm00001d008205_P001	EnsemblPlants:Zm00001d008205_T001
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

phytochrome interacting factor3 phytochrome interacting factor3

Coordinates

chr8:+:1077606..1080652

Molecular Weight (calculated)

67527.3 Da

IEP (calculated)

6.914

GRAVY (calculated)

-0.574

Length

638 amino acids

Sequence
(BLAST)

001: MSDSSDFAEL LWENGQAVVH ARTRKHPPQQ AAFPPFTFTC SSRAQQRQPV PPLLKTGGGL FADFSSATAG LDAPRDNADL DDTVPWIHYP IPIVDEASPA
101: APALADSFIP DFFSELHAAA ATTSLGPLPP PPPPPPAVQH TGDDNDNRST PVPNPTTGRG PEPSKETHRA PVPGPAGRPE PQPQAELAPA RKPRQESGGG
201: EALMNFSIFS RPAAMARASL RQRPPQTGTD KASNATTSTR VESTVLQSAS ASGPRTAAAP AVFVDQRTAW PSQQPKEVRF PCAAAAPPPT PTAGNLQQER
301: PSNNNMTPPQ KEVETRKASE AAGATATSSV CSGNGAGTGK DDESWRQQKR KTLQAECSAS QDDDPDDESG GMRRSCSRGA KRSRTAEVHN LSERRRRDRI
401: NEKMRALQEL IPNCNKIDKA SMLDEAIEYL KTLQLQVQMM SMGSGLCIPP MLLPPAMQHL QIPPAAAHFP HLGMGLGYGM GVLDMNSAAA AAAAVPFPHM
501: PGAHFPCPMI PGAPLPRGLG IGMPARNTMP VFGVPPGQPI QPPFPSLAGL PVRPNLAPPH ASSAAMANMV QEQQQQQQHQ SLNNGASTAA ATASDPQTIV
601: QAERQHFSVP SSAQTESDQF LDGGGNRAIC TGRNEAET

Best Arabidopsis Sequence Match ( AT1G09530.3 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.