Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG23955 | Sorghum | nucleus | 60.65 | 50.95 |
| Os12t0610200-01 | Rice | nucleus | 52.13 | 46.74 |
| TraesCS5A01G049600.1 | Wheat | nucleus | 37.84 | 44.94 |
| TraesCS5D01G060300.1 | Wheat | nucleus | 38.1 | 43.43 |
| TraesCS5B01G054800.2 | Wheat | nucleus | 36.59 | 43.07 |
| HORVU5Hr1G011780.1 | Barley | nucleus | 36.59 | 42.82 |
| Zm00001d033267_P001 | Maize | nucleus | 42.61 | 31.02 |
| GSMUA_Achr6P31370_001 | Banana | nucleus | 24.81 | 26.61 |
| GSMUA_Achr6P30080_001 | Banana | nucleus | 26.57 | 26.43 |
| Zm00001d002288_P002 | Maize | nucleus | 13.28 | 24.77 |
| Zm00001d034298_P001 | Maize | nucleus | 25.06 | 23.7 |
| Zm00001d026317_P003 | Maize | nucleus, plastid | 13.53 | 22.78 |
| Zm00001d013130_P001 | Maize | nucleus | 21.8 | 22.48 |
| GSMUA_Achr5P02280_001 | Banana | nucleus | 29.57 | 21.69 |
| GSMUA_Achr4P31770_001 | Banana | nucleus | 30.58 | 20.57 |
| Zm00001d018416_P001 | Maize | mitochondrion | 16.04 | 19.39 |
| Zm00001d045212_P001 | Maize | nucleus | 16.04 | 18.88 |
| Zm00001d018967_P001 | Maize | nucleus | 12.78 | 17.89 |
| Zm00001d013073_P002 | Maize | nucleus | 12.53 | 17.54 |
| Zm00001d040536_P005 | Maize | nucleus | 24.81 | 17.46 |
| Zm00001d024783_P001 | Maize | nucleus | 21.8 | 17.23 |
| Zm00001d018374_P001 | Maize | nucleus | 16.04 | 16.45 |
| Zm00001d029898_P001 | Maize | nucleus | 19.55 | 15.92 |
| Zm00001d052038_P001 | Maize | nucleus | 13.28 | 15.87 |
| Zm00001d008205_P001 | Maize | nucleus | 25.31 | 15.83 |
| Zm00001d020490_P001 | Maize | nucleus | 13.53 | 15.7 |
| Zm00001d045107_P001 | Maize | nucleus | 12.53 | 15.06 |
| Zm00001d005750_P002 | Maize | mitochondrion | 13.28 | 12.96 |
| Zm00001d000291_P001 | Maize | nucleus | 14.79 | 12.58 |
| Zm00001d045046_P001 | Maize | nucleus | 12.78 | 10.6 |
| Zm00001d037098_P003 | Maize | nucleus | 13.03 | 9.98 |
| Zm00001d016873_P001 | Maize | nucleus | 12.03 | 9.82 |
| Zm00001d029897_P001 | Maize | nucleus | 6.02 | 8.79 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | UniProt:A0A1D6KG38 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| ProteinID:ONM02052.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0008445881 | EnsemblPlantsGene:Zm00001d031044 | EnsemblPlants:Zm00001d031044_P001 | EnsemblPlants:Zm00001d031044_T001 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
bHLH-transcription factor 163Transcription factor PIF4
Coordinates
chr1:+:174811257..174813790
Molecular Weight (calculated)
42967.8 Da
IEP (calculated)
6.674
GRAVY (calculated)
-0.497
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTAIEHACS VVECAATARA AMDMSHYIPD WSSSMGDTFA PLGGEDDDGL IELMWRNGHV VMQAQAPRKP PRPDDDEAAA AQAQAWFQYP VEERADLFSE
101: LFGEAQAAVG GARGEAARQS IRMMPPPPPP PRPAQAPREE KACPGDGGTA TATDGAGSSV LTVVSSLCGS NGNHVQATAP GDVARARDVL MVTSSSTTRS
201: RSCTTKSEQP GPGPGAARRS GKRKHNDATD AEDVGLECEP AQRTTTAKRR RAAQVHNLSE RRRRDRINEK MKALQELIPH CNKADKASML DEAIEYLKSL
301: QLQLQVVWMG GGIAAAGVHQ RTMVAAPGRP PHVASLPASA PDLYTRYLAV DHLPPPPLVP PPRTVELSKP LNIDEFYLYI IYAENYGKPE IQIRGMVTS
101: LFGEAQAAVG GARGEAARQS IRMMPPPPPP PRPAQAPREE KACPGDGGTA TATDGAGSSV LTVVSSLCGS NGNHVQATAP GDVARARDVL MVTSSSTTRS
201: RSCTTKSEQP GPGPGAARRS GKRKHNDATD AEDVGLECEP AQRTTTAKRR RAAQVHNLSE RRRRDRINEK MKALQELIPH CNKADKASML DEAIEYLKSL
301: QLQLQVVWMG GGIAAAGVHQ RTMVAAPGRP PHVASLPASA PDLYTRYLAV DHLPPPPLVP PPRTVELSKP LNIDEFYLYI IYAENYGKPE IQIRGMVTS
001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQVH FL
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQVH FL
Arabidopsis Description
PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.