Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d013130_P001 | Maize | nucleus | 78.2 | 85.27 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 61.61 | 65.66 |
| Os03t0782500-01 | Rice | nucleus | 62.8 | 64.63 |
| TraesCS5B01G422000.1 | Wheat | nucleus | 61.37 | 63.17 |
| TraesCS5D01G428400.2 | Wheat | nucleus | 62.09 | 62.68 |
| TraesCS5A01G420200.1 | Wheat | nucleus | 58.29 | 58.57 |
| KXG37432 | Sorghum | plastid | 46.68 | 40.87 |
| CDY00603 | Canola | nucleus, plastid | 23.7 | 36.5 |
| CDY67566 | Canola | nucleus, plastid | 23.7 | 36.5 |
| CDX83509 | Canola | nucleus | 30.81 | 31.48 |
| Bra007430.1-P | Field mustard | nucleus | 31.52 | 31.22 |
| Bra000283.1-P | Field mustard | nucleus | 30.33 | 30.99 |
| CDY42809 | Canola | nucleus | 30.33 | 30.92 |
| CDY30375 | Canola | nucleus | 29.38 | 30.54 |
| Bra037742.1-P | Field mustard | nucleus | 29.38 | 30.54 |
| CDY14866 | Canola | nucleus | 29.15 | 30.52 |
| CDY29961 | Canola | nucleus | 29.38 | 30.47 |
| CDX70453 | Canola | nucleus | 29.38 | 30.47 |
| CDY06026 | Canola | nucleus | 31.75 | 30.32 |
| CDX71916 | Canola | nucleus | 31.75 | 30.25 |
| AT3G59060.2 | Thale cress | nucleus | 31.04 | 29.5 |
| Solyc07g043580.2.1 | Tomato | nucleus | 33.89 | 28.89 |
| PGSC0003DMT400041156 | Potato | nucleus | 34.36 | 28.05 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 31.28 | 27.97 |
| KRH45975 | Soybean | nucleus | 33.41 | 26.86 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 35.31 | 26.7 |
| KRG99030 | Soybean | nucleus | 34.6 | 26.69 |
| Zm00001d002288_P002 | Maize | nucleus | 13.03 | 25.7 |
| Zm00001d031044_P001 | Maize | nucleus | 23.7 | 25.06 |
| Zm00001d026317_P003 | Maize | nucleus, plastid | 13.98 | 24.89 |
| KRH73584 | Soybean | nucleus | 32.94 | 24.73 |
| KRH14535 | Soybean | nucleus | 32.23 | 24.2 |
| Zm00001d033267_P001 | Maize | nucleus | 27.49 | 21.17 |
| Zm00001d045212_P001 | Maize | nucleus | 16.11 | 20.06 |
| Zm00001d018416_P001 | Maize | mitochondrion | 15.64 | 20.0 |
| Zm00001d040536_P005 | Maize | nucleus | 25.59 | 19.05 |
| Zm00001d024783_P001 | Maize | nucleus | 22.04 | 18.42 |
| Zm00001d018967_P001 | Maize | nucleus | 12.32 | 18.25 |
| Zm00001d013073_P002 | Maize | nucleus | 12.09 | 17.89 |
| Zm00001d020490_P001 | Maize | nucleus | 14.46 | 17.73 |
| Zm00001d008205_P001 | Maize | nucleus | 25.12 | 16.61 |
| Zm00001d018374_P001 | Maize | nucleus | 14.22 | 15.42 |
| Zm00001d052038_P001 | Maize | nucleus | 11.61 | 14.67 |
| Zm00001d005750_P002 | Maize | mitochondrion | 13.98 | 14.43 |
| Zm00001d029898_P001 | Maize | nucleus | 16.59 | 14.29 |
| Zm00001d045107_P001 | Maize | nucleus | 11.14 | 14.16 |
| Zm00001d000291_P001 | Maize | nucleus | 15.64 | 14.07 |
| Zm00001d016873_P001 | Maize | nucleus | 12.32 | 10.63 |
| Zm00001d045046_P001 | Maize | nucleus | 11.61 | 10.19 |
| Zm00001d037098_P003 | Maize | nucleus | 11.37 | 9.21 |
| Zm00001d029897_P001 | Maize | nucleus | 4.03 | 6.23 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | UniProt:A0A1D6L6L0 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | ProteinID:ONM09935.1 |
| ProteinID:ONM09936.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0001B63983 | EnsemblPlantsGene:Zm00001d034298 | EnsemblPlants:Zm00001d034298_P001 | EnsemblPlants:Zm00001d034298_T001 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
bHLH-transcription factor 47Transcription factor PIF4
Coordinates
chr1:-:288721311..288725239
Molecular Weight (calculated)
45606.5 Da
IEP (calculated)
6.639
GRAVY (calculated)
-0.621
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGNARSAAT NQKKPVVADD DLVELLWHNG SVVAQPQAHQ RPAPTYDPDR PGTSGLTGEE TAAWFPDTLD DALEKDLYTQ LWYSTIADAA PQHEGTLPGP
101: TSQPSPSPPV GSSGVESSWA GDICSTFCGS NQVLRTPARI RGKDAALQSE LPSNTGAHDG TSSSGGSGSN YGGFGLPSDS VHVQKRKGRC RDDSDSPSED
201: AECEEASEET KPSRRYGTKR RTRAAEVHNL SERRRRDRIN EKMRALQELI PHCNKTDKAS ILDETIEYLK SLQMQVQIMW MTSGMAPMMF PGVHQFIPQM
301: ALGMNPGCIP AAQGLSQMPR LPYMNHTLPN HIHLNSSPAM NLMNPLNAAN QVQIGHLRDA SSHLLHLDGG RAAVVPQVPG PGPHVHGHQI AQAEEHNKIL
401: EVAASTVIPT SKAGQPPTLH RV
101: TSQPSPSPPV GSSGVESSWA GDICSTFCGS NQVLRTPARI RGKDAALQSE LPSNTGAHDG TSSSGGSGSN YGGFGLPSDS VHVQKRKGRC RDDSDSPSED
201: AECEEASEET KPSRRYGTKR RTRAAEVHNL SERRRRDRIN EKMRALQELI PHCNKTDKAS ILDETIEYLK SLQMQVQIMW MTSGMAPMMF PGVHQFIPQM
301: ALGMNPGCIP AAQGLSQMPR LPYMNHTLPN HIHLNSSPAM NLMNPLNAAN QVQIGHLRDA SSHLLHLDGG RAAVVPQVPG PGPHVHGHQI AQAEEHNKIL
401: EVAASTVIPT SKAGQPPTLH RV
001: MEQVFADWNF EDNFHMSTNK RSIRPEDELV ELLWRDGQVV LQSQARREPS VQVQTHKQET LRKPNNIFLD NQETVQKPNY AALDDQETVS WIQYPPDDVI
101: DPFESEFSSH FFSSIDHLGG PEKPRTIEET VKHEAQAMAP PKFRSSVITV GPSHCGSNQS TNIHQATTLP VSMSDRSKNV EERLDTSSGG SSGCSYGRNN
201: KETVSGTSVT IDRKRKHVMD ADQESVSQSD IGLTSTDDQT MGNKSSQRSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSRTD KASILDEAID
301: YLKSLQMQLQ VMWMGSGMAA AAAAAASPMM FPGVQSSPYI NQMAMQSQMQ LSQFPVMNRS APQNHPGLVC QNPVQLQLQA QNQILSEQLA RYMGGIPQMP
401: PAGNQTVQQQ PADMLGFGSP AGPQSQLSAP ATTDSLHMGK IG
101: DPFESEFSSH FFSSIDHLGG PEKPRTIEET VKHEAQAMAP PKFRSSVITV GPSHCGSNQS TNIHQATTLP VSMSDRSKNV EERLDTSSGG SSGCSYGRNN
201: KETVSGTSVT IDRKRKHVMD ADQESVSQSD IGLTSTDDQT MGNKSSQRSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSRTD KASILDEAID
301: YLKSLQMQLQ VMWMGSGMAA AAAAAASPMM FPGVQSSPYI NQMAMQSQMQ LSQFPVMNRS APQNHPGLVC QNPVQLQLQA QNQILSEQLA RYMGGIPQMP
401: PAGNQTVQQQ PADMLGFGSP AGPQSQLSAP ATTDSLHMGK IG
Arabidopsis Description
PIF5Transcription factor PIF5 [Source:UniProtKB/Swiss-Prot;Acc:Q84LH8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.