Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29961 | Canola | nucleus | 95.53 | 94.59 |
| CDX70453 | Canola | nucleus | 95.53 | 94.59 |
| Bra037742.1-P | Field mustard | nucleus | 93.05 | 92.36 |
| CDY30375 | Canola | nucleus | 93.05 | 92.36 |
| CDX83509 | Canola | nucleus | 74.94 | 73.12 |
| CDY42809 | Canola | nucleus | 74.19 | 72.22 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 75.93 | 64.83 |
| CDY00603 | Canola | nucleus, plastid | 38.21 | 56.2 |
| CDY67566 | Canola | nucleus, plastid | 38.21 | 56.2 |
| CDY06026 | Canola | nucleus | 60.05 | 54.75 |
| CDX71916 | Canola | nucleus | 60.05 | 54.63 |
| CDY37185 | Canola | mitochondrion | 10.67 | 43.88 |
| TraesCS2A01G253900.2 | Wheat | nucleus | 28.78 | 32.4 |
| TraesCS2B01G273500.1 | Wheat | nucleus | 28.78 | 32.4 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 31.27 | 31.82 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 28.54 | 31.77 |
| Os03t0782500-01 | Rice | nucleus | 31.76 | 31.22 |
| Solyc07g043580.2.1 | Tomato | nucleus | 38.21 | 31.11 |
| TraesCS5B01G422000.1 | Wheat | nucleus | 31.02 | 30.49 |
| KRH45975 | Soybean | nucleus | 39.7 | 30.48 |
| PGSC0003DMT400041156 | Potato | nucleus | 38.46 | 29.98 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 41.44 | 29.93 |
| TraesCS5D01G428400.2 | Wheat | nucleus | 31.02 | 29.9 |
| Zm00001d034298_P001 | Maize | nucleus | 30.52 | 29.15 |
| KRG99030 | Soybean | nucleus | 38.71 | 28.52 |
| KRH14535 | Soybean | nucleus | 39.45 | 28.29 |
| TraesCS5A01G420200.1 | Wheat | nucleus | 29.28 | 28.1 |
| KRH73584 | Soybean | nucleus | 38.96 | 27.94 |
| OQU88421 | Sorghum | nucleus | 28.29 | 27.6 |
| TraesCS2D01G254400.3 | Wheat | nucleus | 29.03 | 27.21 |
| Zm00001d013130_P001 | Maize | nucleus | 25.31 | 26.36 |
| Os07t0143200-01 | Rice | nucleus | 27.05 | 26.33 |
| CDY24734 | Canola | plastid | 8.68 | 24.65 |
| CDY35224 | Canola | nucleus | 15.14 | 23.55 |
| CDY31989 | Canola | nucleus | 27.79 | 23.53 |
| CDY01438 | Canola | nucleus, plastid | 12.66 | 23.39 |
| CDY12804 | Canola | nucleus, plastid | 12.41 | 23.15 |
| CDY65390 | Canola | nucleus | 11.91 | 22.97 |
| CDY05725 | Canola | nucleus | 28.78 | 22.88 |
| CDY35220 | Canola | nucleus | 20.84 | 22.64 |
| CDY20289 | Canola | nucleus | 11.66 | 22.27 |
| CDY06870 | Canola | nucleus | 24.81 | 21.98 |
| CDX91917 | Canola | nucleus | 18.61 | 21.61 |
| CDX83214 | Canola | nucleus | 18.36 | 21.26 |
| CDX67873 | Canola | nucleus | 16.13 | 21.17 |
| CDX69281 | Canola | nucleus, plastid | 18.11 | 20.92 |
| CDY06865 | Canola | nucleus | 18.61 | 20.89 |
| CDY44048 | Canola | nucleus, plastid | 17.62 | 20.82 |
| CDY06867 | Canola | nucleus | 24.57 | 20.54 |
| CDY22448 | Canola | nucleus, plastid | 17.87 | 20.45 |
| CDY65446 | Canola | nucleus | 16.63 | 20.24 |
| CDX75629 | Canola | nucleus | 17.37 | 20.23 |
| CDX74328 | Canola | nucleus | 18.86 | 19.64 |
| CDY21498 | Canola | nucleus | 18.36 | 19.12 |
| CDY22636 | Canola | nucleus | 22.58 | 18.53 |
| CDX80064 | Canola | nucleus | 18.36 | 18.5 |
| CDX94963 | Canola | nucleus | 22.58 | 18.27 |
| CDX83349 | Canola | nucleus | 18.11 | 18.07 |
| CDY64745 | Canola | nucleus | 22.33 | 17.93 |
| CDY06358 | Canola | nucleus | 21.84 | 17.92 |
| CDY11836 | Canola | nucleus | 12.66 | 17.83 |
| CDY66254 | Canola | nucleus | 17.62 | 17.75 |
| CDY46133 | Canola | nucleus | 8.19 | 17.28 |
| KXG37432 | Sorghum | plastid | 20.6 | 17.22 |
| CDY50911 | Canola | nucleus | 11.41 | 16.97 |
| CDY55014 | Canola | nucleus | 12.16 | 16.95 |
| CDX88653 | Canola | nucleus | 12.41 | 16.67 |
| CDY62262 | Canola | nucleus | 12.41 | 16.56 |
| CDX68710 | Canola | nucleus | 13.4 | 16.51 |
| CDY28232 | Canola | nucleus | 13.4 | 16.51 |
| CDX91293 | Canola | nucleus | 12.16 | 16.44 |
| CDY21898 | Canola | nucleus | 12.16 | 16.28 |
| CDY02785 | Canola | nucleus | 11.91 | 16.22 |
| CDY18011 | Canola | nucleus | 12.16 | 16.12 |
| CDY22062 | Canola | nucleus | 12.16 | 16.12 |
| CDX76616 | Canola | extracellular | 14.14 | 15.92 |
| CDY32733 | Canola | nucleus | 11.91 | 15.89 |
| CDX97278 | Canola | nucleus | 11.66 | 15.72 |
| CDY34780 | Canola | nucleus | 13.15 | 15.68 |
| CDY11401 | Canola | extracellular | 13.65 | 15.62 |
| CDX90930 | Canola | nucleus | 11.91 | 15.48 |
| CDY18143 | Canola | nucleus | 11.66 | 15.36 |
| CDX76819 | Canola | nucleus | 12.9 | 15.29 |
| CDY35222 | Canola | nucleus | 21.84 | 15.25 |
| CDX89919 | Canola | nucleus | 11.41 | 14.79 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 6.45 | 12.81 |
| CDY46132 | Canola | endoplasmic reticulum | 4.47 | 10.23 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | GO:A0A078FNY5 | UniProt:A0A078FNY5 | EnsemblPlants:CDY14866 |
| ProteinID:CDY14866 | ProteinID:CDY14866.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00084756001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEECAE | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g48630DBnaC04g48630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNY5]
Coordinates
chrLK032047:+:779268..782266
Molecular Weight (calculated)
45569.4 Da
IEP (calculated)
7.190
GRAVY (calculated)
-0.852
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHQGWNFEE NCNLSNNRRS SLRPQDELVE LLWRDGQVVL QSQTNREQTQ AQTVKHDHHQ ETLRSHTFLE DQETVSWLQY PPYEDQFITD GFSSHFFSTG
101: NPLERPASEM VKHEAGPDPP DQAMPPPMFR LPDSSSSVKE LGKEQYSVVT VGPSSQSHNN LDVSVRHDRS KTVNERLYHN AGSSSGGSSG CSFGKNIKEM
201: AGVQSITTDR KRKHIMDTDE YASQPDVIGN KTNQRPGSTG RSRAAEVHNL SERRRRDRIN ERMKTLQELI PHCTKTDKAS ILDEAIDYMK SLKLQLQVMW
301: MGNGMVAAAT APMMLPGVQP QPFIRQMQSP VQLPRFPVMN NPGIFCQNPT QNQVFSNWFD RYIGVFPQMQ AAPQPVEMLR FGSQAGQQSQ QPSAPTKTTD
401: GSR
101: NPLERPASEM VKHEAGPDPP DQAMPPPMFR LPDSSSSVKE LGKEQYSVVT VGPSSQSHNN LDVSVRHDRS KTVNERLYHN AGSSSGGSSG CSFGKNIKEM
201: AGVQSITTDR KRKHIMDTDE YASQPDVIGN KTNQRPGSTG RSRAAEVHNL SERRRRDRIN ERMKTLQELI PHCTKTDKAS ILDEAIDYMK SLKLQLQVMW
301: MGNGMVAAAT APMMLPGVQP QPFIRQMQSP VQLPRFPVMN NPGIFCQNPT QNQVFSNWFD RYIGVFPQMQ AAPQPVEMLR FGSQAGQQSQ QPSAPTKTTD
401: GSR
001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQMQPME
401: MLRFSSPAGQ QSQQPSSVPT KTTDGSRLDH
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQMQPME
401: MLRFSSPAGQ QSQQPSSVPT KTTDGSRLDH
Arabidopsis Description
PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.