Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG99030 | Soybean | nucleus | 93.9 | 90.13 |
| KRH73584 | Soybean | nucleus | 70.67 | 66.01 |
| KRH14535 | Soybean | nucleus | 70.1 | 65.48 |
| VIT_12s0028g01110.t01 | Wine grape | nucleus | 53.14 | 50.0 |
| PGSC0003DMT400041156 | Potato | nucleus | 46.1 | 46.81 |
| Solyc07g043580.2.1 | Tomato | nucleus | 44.0 | 46.67 |
| KRH71636 | Soybean | golgi, plasma membrane, vacuole | 13.14 | 45.1 |
| CDY00603 | Canola | nucleus, plastid | 23.43 | 44.89 |
| CDY67566 | Canola | nucleus, plastid | 23.43 | 44.89 |
| Bra000283.1-P | Field mustard | nucleus | 33.9 | 43.1 |
| CDX83509 | Canola | nucleus | 33.71 | 42.86 |
| CDY42809 | Canola | nucleus | 32.95 | 41.79 |
| CDY30375 | Canola | nucleus | 32.0 | 41.38 |
| Bra037742.1-P | Field mustard | nucleus | 32.0 | 41.38 |
| CDY29961 | Canola | nucleus | 31.62 | 40.79 |
| CDX70453 | Canola | nucleus | 31.62 | 40.79 |
| CDY14866 | Canola | nucleus | 30.48 | 39.7 |
| Bra007430.1-P | Field mustard | nucleus | 32.0 | 39.44 |
| CDX71916 | Canola | nucleus | 33.14 | 39.28 |
| CDY06026 | Canola | nucleus | 32.95 | 39.14 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 35.05 | 38.98 |
| AT3G59060.2 | Thale cress | nucleus | 32.95 | 38.96 |
| HORVU5Hr1G102240.3 | Barley | nucleus | 28.19 | 37.37 |
| KRH04711 | Soybean | plastid | 11.24 | 36.88 |
| TraesCS5B01G422000.1 | Wheat | nucleus | 28.19 | 36.1 |
| TraesCS5D01G428400.2 | Wheat | nucleus | 28.57 | 35.89 |
| Os03t0782500-01 | Rice | nucleus | 28.0 | 35.85 |
| TraesCS2B01G273500.1 | Wheat | nucleus | 23.81 | 34.92 |
| TraesCS2A01G253900.2 | Wheat | nucleus | 23.43 | 34.36 |
| TraesCS5A01G420200.1 | Wheat | nucleus | 27.05 | 33.81 |
| HORVU2Hr1G060680.1 | Barley | nucleus | 23.24 | 33.7 |
| Zm00001d034298_P001 | Maize | nucleus | 26.86 | 33.41 |
| KRH76132 | Soybean | nucleus | 11.62 | 33.33 |
| KRH72281 | Soybean | nucleus, plastid | 7.81 | 32.8 |
| OQU88421 | Sorghum | nucleus | 25.52 | 32.45 |
| Os07t0143200-01 | Rice | nucleus | 24.57 | 31.16 |
| Zm00001d013130_P001 | Maize | nucleus | 22.1 | 29.97 |
| KRH32290 | Soybean | nucleus | 28.0 | 29.94 |
| TraesCS2D01G254400.3 | Wheat | nucleus | 24.19 | 29.53 |
| KRH19683 | Soybean | nucleus | 28.38 | 29.27 |
| KRH67519 | Soybean | nucleus | 27.43 | 28.69 |
| KRH04595 | Soybean | nucleus | 13.9 | 26.84 |
| KRH28453 | Soybean | nucleus | 13.9 | 25.09 |
| KRH69138 | Soybean | cytosol, nucleus, vacuole | 8.57 | 25.0 |
| KRH55381 | Soybean | cytosol | 3.24 | 24.64 |
| KRH15381 | Soybean | nucleus | 13.52 | 23.91 |
| KRH77016 | Soybean | nucleus | 16.95 | 23.73 |
| KRH05665 | Soybean | nucleus | 13.33 | 23.57 |
| KRH33663 | Soybean | nucleus | 19.24 | 22.49 |
| KRH68348 | Soybean | nucleus | 21.33 | 21.66 |
| KRH54630 | Soybean | nucleus | 16.38 | 21.39 |
| KRH65412 | Soybean | nucleus | 16.0 | 21.16 |
| KRG88937 | Soybean | nucleus | 18.67 | 21.08 |
| KRH71345 | Soybean | nucleus | 7.05 | 20.9 |
| KRG96615 | Soybean | nucleus | 20.19 | 20.46 |
| KRH75301 | Soybean | nucleus | 17.71 | 20.31 |
| KRH68390 | Soybean | nucleus | 23.81 | 20.03 |
| KXG37432 | Sorghum | plastid | 18.29 | 19.92 |
| KRG96663 | Soybean | nucleus | 23.81 | 19.75 |
| KRH33733 | Soybean | nucleus | 25.52 | 19.39 |
| KRG90443 | Soybean | nucleus | 26.1 | 18.98 |
| KRH03075 | Soybean | nucleus | 12.76 | 18.26 |
| KRH05051 | Soybean | nucleus | 13.71 | 18.0 |
| KRH32094 | Soybean | nucleus | 9.52 | 17.67 |
| KRG95612 | Soybean | nucleus | 9.33 | 16.78 |
| KRH67287 | Soybean | nucleus | 9.14 | 16.44 |
| KRH34087 | Soybean | nucleus | 10.1 | 16.16 |
| KRG92679 | Soybean | nucleus | 9.9 | 15.66 |
| KRH12909 | Soybean | nucleus | 13.9 | 15.37 |
| KRH37912 | Soybean | nucleus | 13.9 | 14.9 |
| KRH71344 | Soybean | cytosol | 0.76 | 5.33 |
Protein Annotations
| EntrezGene:100800166 | MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | EMBL:ACUP02005299 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_08G303900 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf |
| UniProt:I1KXW5 | InterPro:IPR011598 | InterPro:IPR036638 | EnsemblPlants:KRH45975 | ProteinID:KRH45975 | ProteinID:KRH45975.1 |
| ProteinID:KRH45976.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF284 | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002948D31 | InterPro:bHLH_dom | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr8:-:42216731..42222444
Molecular Weight (calculated)
57809.1 Da
IEP (calculated)
6.877
GRAVY (calculated)
-0.653
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNSVPDWNF GSDSCVTSTN QKKPMMGVDQ ELVELLWQNG QVVHSQTHRK PVVNSSNLIQ DDETVSWIQY PLEDPLEQEF CSNLLSELAP CEVESYKQIK
101: PFEEGKFTKL DASSAPHVTV SSQLPTMKSS SFQDFSGIPI PAPRFHVSDS PQKNNNHLGG SCKVQNFSHF SAPLNVSSAS ANVHFGDKIT GNMSRNEIRE
201: CSLMTVGSSY CGSNHIPQDP DASRASSNGV WTTTLSVEPE AVRDDVPKTI PQKEKGKSEM LEPAVTSSSG GSGSSLGKTC SLSTRNQGQK RKGIDVEESE
301: EQSEDTELKS ALGNKSSQRT GSARRNRAAE VHNLSERRRR DRINEKMKAL QQLIPHSSKT DKASMLEEAI EYLKSLQLQL QLMWMGSGMA PIMFPGIQHY
401: MSQMGMGMAR PPFPPPIHNP MQLPRVPLDK SVSASQTPNQ TLMCQNPILG AFNYQNQMQN PALSEQYVRY MGYHLMQNAS QPMNVFRYGP QGVQHSQTMI
501: TPSSNSSGNM SGAANIDEAV SGKMG
101: PFEEGKFTKL DASSAPHVTV SSQLPTMKSS SFQDFSGIPI PAPRFHVSDS PQKNNNHLGG SCKVQNFSHF SAPLNVSSAS ANVHFGDKIT GNMSRNEIRE
201: CSLMTVGSSY CGSNHIPQDP DASRASSNGV WTTTLSVEPE AVRDDVPKTI PQKEKGKSEM LEPAVTSSSG GSGSSLGKTC SLSTRNQGQK RKGIDVEESE
301: EQSEDTELKS ALGNKSSQRT GSARRNRAAE VHNLSERRRR DRINEKMKAL QQLIPHSSKT DKASMLEEAI EYLKSLQLQL QLMWMGSGMA PIMFPGIQHY
401: MSQMGMGMAR PPFPPPIHNP MQLPRVPLDK SVSASQTPNQ TLMCQNPILG AFNYQNQMQN PALSEQYVRY MGYHLMQNAS QPMNVFRYGP QGVQHSQTMI
501: TPSSNSSGNM SGAANIDEAV SGKMG
001: MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH
101: QRPTSETVKP KSSPEPPQVM VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS HDRSKNIEEK LNPNASSSSG
201: GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301: DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQPMEML
401: RFSSPAGQQS QQPSSVPTKT TDGSRLDH
Arabidopsis Description
PIF4phytochrome interacting factor 4 [Source:TAIR;Acc:AT2G43010]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.