Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY00603 | Canola | nucleus, plastid | 50.45 | 81.75 |
CDY67566 | Canola | nucleus, plastid | 50.45 | 81.75 |
CDY06026 | Canola | nucleus | 80.86 | 81.22 |
CDX71916 | Canola | nucleus | 80.18 | 80.36 |
Bra007430.1-P | Field mustard | nucleus | 77.03 | 80.28 |
AT2G43010.5 | Thale cress | extracellular, vacuole | 59.23 | 55.72 |
TraesCS2B01G273500.1 | Wheat | nucleus | 27.25 | 33.8 |
TraesCS2A01G253900.2 | Wheat | nucleus | 27.03 | 33.52 |
Os03t0782500-01 | Rice | nucleus | 30.63 | 33.17 |
KRH45975 | Soybean | nucleus | 38.96 | 32.95 |
HORVU5Hr1G102240.3 | Barley | nucleus | 29.28 | 32.83 |
HORVU2Hr1G060680.1 | Barley | nucleus | 26.58 | 32.6 |
Solyc07g043580.2.1 | Tomato | nucleus | 36.26 | 32.53 |
TraesCS5B01G422000.1 | Wheat | nucleus | 29.28 | 31.71 |
VIT_12s0028g01110.t01 | Wine grape | nucleus | 39.64 | 31.54 |
PGSC0003DMT400041156 | Potato | nucleus | 36.71 | 31.53 |
TraesCS5D01G428400.2 | Wheat | nucleus | 29.28 | 31.1 |
Zm00001d034298_P001 | Maize | nucleus | 29.5 | 31.04 |
KRG99030 | Soybean | nucleus | 38.06 | 30.9 |
TraesCS5A01G420200.1 | Wheat | nucleus | 27.7 | 29.29 |
KRH73584 | Soybean | nucleus | 36.49 | 28.83 |
KRH14535 | Soybean | nucleus | 36.26 | 28.65 |
OQU88421 | Sorghum | nucleus | 26.58 | 28.57 |
Zm00001d013130_P001 | Maize | nucleus | 24.77 | 28.42 |
TraesCS2D01G254400.3 | Wheat | nucleus | 27.48 | 28.37 |
Os07t0143200-01 | Rice | nucleus | 25.68 | 27.54 |
AT5G67110.1 | Thale cress | nucleus | 11.26 | 23.81 |
AT2G20180.2 | Thale cress | nucleus | 24.1 | 22.38 |
AT4G28790.1 | Thale cress | nucleus | 19.14 | 20.58 |
AT4G28815.1 | Thale cress | vacuole | 13.96 | 20.2 |
AT3G62090.2 | Thale cress | nucleus | 15.99 | 19.56 |
AT4G28800.2 | Thale cress | nucleus | 18.92 | 18.38 |
AT2G46970.1 | Thale cress | nucleus | 16.67 | 17.79 |
AT4G36930.1 | Thale cress | nucleus | 14.86 | 17.69 |
AT4G00050.1 | Thale cress | nucleus | 15.77 | 17.54 |
AT1G09530.3 | Thale cress | nucleus | 20.27 | 17.18 |
KXG37432 | Sorghum | plastid | 18.47 | 17.01 |
AT4G28811.1 | Thale cress | nucleus | 20.05 | 16.36 |
AT5G58010.1 | Thale cress | nucleus | 10.81 | 16.16 |
AT2G24260.1 | Thale cress | nucleus | 12.61 | 16.0 |
AT4G02590.1 | Thale cress | nucleus | 10.59 | 15.16 |
AT4G30980.2 | Thale cress | nucleus, plastid | 11.49 | 14.25 |
AT1G03040.3 | Thale cress | nucleus | 10.14 | 13.51 |
Protein Annotations
MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | EntrezGene:825075 | EMBL:AB103112 | EMBL:AB493657 |
ProteinID:AEE79868.1 | ProteinID:AEE79869.1 | ProteinID:AEE79870.1 | ProteinID:AEE79871.1 | EMBL:AF488598 | EMBL:AK317374 |
ArrayExpress:AT3G59060 | EnsemblPlantsGene:AT3G59060 | RefSeq:AT3G59060 | TAIR:AT3G59060 | RefSeq:AT3G59060-TAIR-G | EnsemblPlants:AT3G59060.2 |
TAIR:AT3G59060.2 | EMBL:AY081271 | Unigene:At.43437 | UniProt:B9DH29 | EMBL:BT000049 | ProteinID:CAB86934.1 |
ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009693 | GO:GO:0009719 |
GO:GO:0009987 | GO:GO:0010017 | GO:GO:0010244 | GO:GO:0010600 | GO:GO:0010928 | GO:GO:0046983 |
InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | RefSeq:NP_001030889.1 | RefSeq:NP_001030890.1 | RefSeq:NP_191465.3 |
RefSeq:NP_851021.1 | PFAM:PF00010 | Symbol:PIL6 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
PO:PO:0000293 | PO:PO:0001054 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | UniProt:Q84LH8 |
SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000000262D | InterPro:bHLH_dom | SEG:seg | : |
Description
PIF5Transcription factor PIF5 [Source:UniProtKB/Swiss-Prot;Acc:Q84LH8]
Coordinates
chr3:-:21827905..21830837
Molecular Weight (calculated)
49304.9 Da
IEP (calculated)
6.242
GRAVY (calculated)
-0.705
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQVFADWNF EDNFHMSTNK RSIRPEDELV ELLWRDGQVV LQSQARREPS VQVQTHKQET LRKPNNIFLD NQETVQKPNY AALDDQETVS WIQYPPDDVI
101: DPFESEFSSH FFSSIDHLGG PEKPRTIEET VKHEAQAMAP PKFRSSVITV GPSHCGSNQS TNIHQATTLP VSMSDRSKNV EERLDTSSGG SSGCSYGRNN
201: KETVSGTSVT IDRKRKHVMD ADQESVSQSD IGLTSTDDQT MGNKSSQRSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSRTD KASILDEAID
301: YLKSLQMQLQ VMWMGSGMAA AAAAAASPMM FPGVQSSPYI NQMAMQSQMQ LSQFPVMNRS APQNHPGLVC QNPVQLQLQA QNQILSEQLA RYMGGIPQMP
401: PAGNQMQTVQ QQPADMLGFG SPAGPQSQLS APATTDSLHM GKIG
101: DPFESEFSSH FFSSIDHLGG PEKPRTIEET VKHEAQAMAP PKFRSSVITV GPSHCGSNQS TNIHQATTLP VSMSDRSKNV EERLDTSSGG SSGCSYGRNN
201: KETVSGTSVT IDRKRKHVMD ADQESVSQSD IGLTSTDDQT MGNKSSQRSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSRTD KASILDEAID
301: YLKSLQMQLQ VMWMGSGMAA AAAAAASPMM FPGVQSSPYI NQMAMQSQMQ LSQFPVMNRS APQNHPGLVC QNPVQLQLQA QNQILSEQLA RYMGGIPQMP
401: PAGNQMQTVQ QQPADMLGFG SPAGPQSQLS APATTDSLHM GKIG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.