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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY00603 Canola nucleus, plastid 50.45 81.75
CDY67566 Canola nucleus, plastid 50.45 81.75
CDY06026 Canola nucleus 80.86 81.22
CDX71916 Canola nucleus 80.18 80.36
Bra007430.1-P Field mustard nucleus 77.03 80.28
AT2G43010.5 Thale cress extracellular, vacuole 59.23 55.72
TraesCS2B01G273500.1 Wheat nucleus 27.25 33.8
TraesCS2A01G253900.2 Wheat nucleus 27.03 33.52
Os03t0782500-01 Rice nucleus 30.63 33.17
KRH45975 Soybean nucleus 38.96 32.95
HORVU5Hr1G102240.3 Barley nucleus 29.28 32.83
HORVU2Hr1G060680.1 Barley nucleus 26.58 32.6
Solyc07g043580.2.1 Tomato nucleus 36.26 32.53
TraesCS5B01G422000.1 Wheat nucleus 29.28 31.71
VIT_12s0028g01110.t01 Wine grape nucleus 39.64 31.54
PGSC0003DMT400041156 Potato nucleus 36.71 31.53
TraesCS5D01G428400.2 Wheat nucleus 29.28 31.1
Zm00001d034298_P001 Maize nucleus 29.5 31.04
KRG99030 Soybean nucleus 38.06 30.9
TraesCS5A01G420200.1 Wheat nucleus 27.7 29.29
KRH73584 Soybean nucleus 36.49 28.83
KRH14535 Soybean nucleus 36.26 28.65
OQU88421 Sorghum nucleus 26.58 28.57
Zm00001d013130_P001 Maize nucleus 24.77 28.42
TraesCS2D01G254400.3 Wheat nucleus 27.48 28.37
Os07t0143200-01 Rice nucleus 25.68 27.54
AT5G67110.1 Thale cress nucleus 11.26 23.81
AT2G20180.2 Thale cress nucleus 24.1 22.38
AT4G28790.1 Thale cress nucleus 19.14 20.58
AT4G28815.1 Thale cress vacuole 13.96 20.2
AT3G62090.2 Thale cress nucleus 15.99 19.56
AT4G28800.2 Thale cress nucleus 18.92 18.38
AT2G46970.1 Thale cress nucleus 16.67 17.79
AT4G36930.1 Thale cress nucleus 14.86 17.69
AT4G00050.1 Thale cress nucleus 15.77 17.54
AT1G09530.3 Thale cress nucleus 20.27 17.18
KXG37432 Sorghum plastid 18.47 17.01
AT4G28811.1 Thale cress nucleus 20.05 16.36
AT5G58010.1 Thale cress nucleus 10.81 16.16
AT2G24260.1 Thale cress nucleus 12.61 16.0
AT4G02590.1 Thale cress nucleus 10.59 15.16
AT4G30980.2 Thale cress nucleus, plastid 11.49 14.25
AT1G03040.3 Thale cress nucleus 10.14 13.51
Protein Annotations
MapMan:15.5.32MapMan:26.1.1.4Gene3D:4.10.280.10EntrezGene:825075EMBL:AB103112EMBL:AB493657
ProteinID:AEE79868.1ProteinID:AEE79869.1ProteinID:AEE79870.1ProteinID:AEE79871.1EMBL:AF488598EMBL:AK317374
ArrayExpress:AT3G59060EnsemblPlantsGene:AT3G59060RefSeq:AT3G59060TAIR:AT3G59060RefSeq:AT3G59060-TAIR-GEnsemblPlants:AT3G59060.2
TAIR:AT3G59060.2EMBL:AY081271Unigene:At.43437UniProt:B9DH29EMBL:BT000049ProteinID:CAB86934.1
ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009585GO:GO:0009605GO:GO:0009628GO:GO:0009693GO:GO:0009719
GO:GO:0009987GO:GO:0010017GO:GO:0010244GO:GO:0010600GO:GO:0010928GO:GO:0046983
InterPro:HLH_DNA-bd_sfInterPro:IPR011598InterPro:IPR036638RefSeq:NP_001030889.1RefSeq:NP_001030890.1RefSeq:NP_191465.3
RefSeq:NP_851021.1PFAM:PF00010Symbol:PIL6PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019
PO:PO:0009006PO:PO:0009009PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PFscan:PS50888PANTHER:PTHR12565PANTHER:PTHR12565:SF194UniProt:Q84LH8
SMART:SM00353SUPFAM:SSF47459UniParc:UPI000000262DInterPro:bHLH_domSEG:seg:
Description
PIF5Transcription factor PIF5 [Source:UniProtKB/Swiss-Prot;Acc:Q84LH8]
Coordinates
chr3:-:21827905..21830837
Molecular Weight (calculated)
49304.9 Da
IEP (calculated)
6.242
GRAVY (calculated)
-0.705
Length
444 amino acids
Sequence
(BLAST)
001: MEQVFADWNF EDNFHMSTNK RSIRPEDELV ELLWRDGQVV LQSQARREPS VQVQTHKQET LRKPNNIFLD NQETVQKPNY AALDDQETVS WIQYPPDDVI
101: DPFESEFSSH FFSSIDHLGG PEKPRTIEET VKHEAQAMAP PKFRSSVITV GPSHCGSNQS TNIHQATTLP VSMSDRSKNV EERLDTSSGG SSGCSYGRNN
201: KETVSGTSVT IDRKRKHVMD ADQESVSQSD IGLTSTDDQT MGNKSSQRSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSRTD KASILDEAID
301: YLKSLQMQLQ VMWMGSGMAA AAAAAASPMM FPGVQSSPYI NQMAMQSQMQ LSQFPVMNRS APQNHPGLVC QNPVQLQLQA QNQILSEQLA RYMGGIPQMP
401: PAGNQMQTVQ QQPADMLGFG SPAGPQSQLS APATTDSLHM GKIG
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.