Factsheet for TraesCS5A01G420200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G428400.2	Wheat	nucleus	89.52	89.95
TraesCS5B01G422000.1	Wheat	nucleus	86.43	88.54
HORVU5Hr1G102240.3	Barley	nucleus	81.19	86.11
Os03t0782500-01	Rice	nucleus	63.57	65.12
Zm00001d034298_P001	Maize	nucleus	58.57	58.29
Zm00001d013130_P001	Maize	nucleus	53.33	57.88
TraesCS2A01G253900.2	Wheat	nucleus	40.0	46.93
CDY00603	Canola	nucleus, plastid	24.05	36.86
CDY67566	Canola	nucleus, plastid	24.05	36.86
TraesCS6A01G190600.1	Wheat	nucleus	10.71	34.88
KXG37432	Sorghum	plastid	36.9	32.16
CDY29961	Canola	nucleus	28.57	29.48
CDX70453	Canola	nucleus	28.57	29.48
CDY30375	Canola	nucleus	28.33	29.31
Bra037742.1-P	Field mustard	nucleus	28.33	29.31
CDY14866	Canola	nucleus	28.1	29.28
CDY42809	Canola	nucleus	28.81	29.23
Bra000283.1-P	Field mustard	nucleus	28.57	29.06
CDX83509	Canola	nucleus	28.57	29.06
TraesCS2A01G461700.2	Wheat	nucleus	12.62	28.19
AT3G59060.2	Thale cress	nucleus	29.29	27.7
Bra007430.1-P	Field mustard	nucleus	28.1	27.7
Solyc07g043580.2.1	Tomato	nucleus	32.62	27.68
CDX71916	Canola	nucleus	28.57	27.09
TraesCS5A01G049600.1	Wheat	nucleus	21.67	27.08
KRH45975	Soybean	nucleus	33.81	27.05
CDY06026	Canola	nucleus	28.33	26.92
VIT_12s0028g01110.t01	Wine grape	nucleus	35.71	26.88
PGSC0003DMT400041156	Potato	nucleus	32.86	26.69
KRG99030	Soybean	nucleus	34.76	26.69
AT2G43010.5	Thale cress	extracellular, vacuole	29.52	26.27
KRH73584	Soybean	nucleus	33.33	24.91
KRH14535	Soybean	nucleus	33.1	24.73
TraesCS5A01G376500.1	Wheat	nucleus	26.67	23.0
TraesCS7A01G126900.1	Wheat	nucleus	15.48	19.64
TraesCS1A01G083000.1	Wheat	nucleus	23.57	19.53
TraesCS6A01G373500.2	Wheat	nucleus	13.81	19.14
TraesCS5A01G441900.1	Wheat	nucleus	11.19	16.73
TraesCS7A01G147500.1	Wheat	nucleus	15.24	16.08
TraesCS1A01G212700.1	Wheat	nucleus	17.14	15.82
TraesCS6A01G358400.3	Wheat	nucleus	13.1	14.18
TraesCS5A01G225700.1	Wheat	nucleus	14.52	13.32
TraesCS7A01G157700.1	Wheat	nucleus	12.86	11.25

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009628	GO:GO:0009987	GO:GO:0045893	GO:GO:0046983	GO:GO:0080006
GO:GO:0090229	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	PFAM:PF00010	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF194	SMART:SM00353	SUPFAM:SSF47459	EnsemblPlantsGene:TraesCS5A01G420200	EnsemblPlants:TraesCS5A01G420200.1
InterPro:bHLH_dom	TIGR:cd00083	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5A:+:606893553..606895469

Molecular Weight (calculated)

44610.3 Da

IEP (calculated)

7.015

GRAVY (calculated)

-0.551

Length

420 amino acids

Sequence
(BLAST)

001: MDGNGRSAAS HKKPLVADND LVELLWHNGG VVAQPQTHPR PAPSGLAGGG GETAAWFADD VDALGNDVYA QLWNSIAVGA APDVACAALP GPSSHPPPPP
101: PPPPMPSGIA SSWTGGDIGS TFCGSSLVPE VPAGGREEAS AAPPSEGTRE ASTRDGGAGT SSSGGSGSNF GGSGLPSESG GHAHKRKGRG KDDSDSRSER
201: KLQDVECEAT EETKSSRRHG SKRRSRAAEV HNQSERRRRD RINEKMRSLQ ELIPHCNKAD KASILDEAIE YLKSLQMQVQ IMWMTTGMAP MMFPGSHQFM
301: PPMAVGMNSA CMPAAQGLNQ MARVPYMNHS LSNHIPMSPS PAMNPMYIAN QMQNIQLREA SNHFLHLDGG QATAPQLWFQ FFAGSRTICL YTTSSTEKPD
401: TGSAGLYCCA NFWARTTTCT

Best Arabidopsis Sequence Match ( AT2G20180.2 )
(BLAST)

001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG

Arabidopsis Description

PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.