Factsheet for TraesCS5A01G049600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G054800.2	Wheat	nucleus	88.99	88.2
TraesCS5D01G060300.1	Wheat	nucleus	89.58	86.0
HORVU5Hr1G011780.1	Barley	nucleus	82.14	80.94
Os12t0610200-01	Rice	nucleus	55.95	42.25
TraesCS6A01G190600.1	Wheat	nucleus	14.58	37.98
Zm00001d031044_P001	Maize	nucleus	44.94	37.84
KXG23955	Sorghum	nucleus	52.08	36.84
TraesCS5A01G376500.1	Wheat	nucleus	49.11	33.88
TraesCS2A01G461700.2	Wheat	nucleus	14.58	26.06
GSMUA_Achr6P31370_001	Banana	nucleus	27.98	25.27
GSMUA_Achr6P30080_001	Banana	nucleus	29.76	24.94
TraesCS2A01G253900.2	Wheat	nucleus	25.6	24.02
GSMUA_Achr5P02280_001	Banana	nucleus	36.31	22.43
TraesCS5A01G420200.1	Wheat	nucleus	27.08	21.67
TraesCS6A01G373500.2	Wheat	nucleus	18.75	20.79
GSMUA_Achr4P31770_001	Banana	nucleus	33.93	19.22
TraesCS7A01G126900.1	Wheat	nucleus	18.15	18.43
TraesCS1A01G083000.1	Wheat	nucleus	26.19	17.36
TraesCS5A01G441900.1	Wheat	nucleus	13.99	16.73
TraesCS7A01G147500.1	Wheat	nucleus	17.26	14.57
TraesCS1A01G212700.1	Wheat	nucleus	19.64	14.51
TraesCS6A01G358400.3	Wheat	nucleus	15.77	13.66
TraesCS5A01G225700.1	Wheat	nucleus	16.07	11.79
TraesCS7A01G157700.1	Wheat	nucleus	14.58	10.21

Protein Annotations

EnsemblPlants:TraesCS5A01G049600.1	EnsemblPlantsGene:TraesCS5A01G049600	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF194	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
TIGR:cd00083	MapMan:15.5.32	MapMan:26.1.1.4	:	:	:

Description

No Description!

Coordinates

chr5A:-:45370227..45371518

Molecular Weight (calculated)

36599.9 Da

IEP (calculated)

5.275

GRAVY (calculated)

-0.627

Length

336 amino acids

Sequence
(BLAST)

001: MNQFVPADWT GNMGDALPPL SGEDDGLVEL LWCSGHVVMQ SQAPPRPAVP EQEAAPWFQY PVVDEDDYSV ERDLFSEIFG GVPADGAGRP CKEEDKERGA
101: ADAVTALRSG VMPPPLLTDK AGLHGDGPRD SPASEAGESS VVTMGSRRVC GGSNQAQTPH VSDTADDDSV LLPRSGREAR DARSYHSASA TLTTSSTWSR
201: PSGASKRKQS EGPSEAMQDV ESDSADVTCE TAQKPTTAKR RRAAQVHNLS ERRRRDRINE KMRALQELVP HCNKTDKASM LDEAIEYLKS LQLQLQVMWA
301: MGGRMTLAPA PVMFPAGAHQ YMQRMAAIHD LRIQFK

Best Arabidopsis Sequence Match ( AT1G09530.1 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.