Factsheet for HORVU5Hr1G011780.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G049600.1	Wheat	nucleus	80.94	82.14
TraesCS5B01G054800.2	Wheat	nucleus	80.94	81.42
TraesCS5D01G060300.1	Wheat	nucleus	81.82	79.71
Os12t0610200-01	Rice	nucleus	51.32	39.33
Zm00001d031044_P001	Maize	nucleus	42.82	36.59
KXG23955	Sorghum	nucleus	47.51	34.11
HORVU5Hr1G093310.11	Barley	nucleus	48.09	29.98
HORVU2Hr1G104040.6	Barley	nucleus	14.66	26.6
GSMUA_Achr6P30080_001	Banana	nucleus	29.33	24.94
GSMUA_Achr6P31370_001	Banana	nucleus	26.69	24.46
HORVU2Hr1G060680.1	Barley	nucleus	24.93	23.48
HORVU5Hr1G102240.3	Barley	nucleus	26.98	23.23
GSMUA_Achr5P02280_001	Banana	nucleus	34.6	21.69
HORVU6Hr1G088020.4	Barley	nucleus	17.89	20.61
GSMUA_Achr4P31770_001	Banana	nucleus	33.14	19.06
HORVU7Hr1G026560.2	Barley	nucleus	17.6	17.75
HORVU1Hr1G017900.1	Barley	nucleus	24.05	16.63
HORVU5Hr1G106310.3	Barley	nucleus	13.78	15.06
HORVU6Hr1G085500.3	Barley	nucleus	15.84	14.92
HORVU7Hr1G030250.5	Barley	nucleus	16.42	14.18
HORVU1Hr1G054260.3	Barley	nucleus	18.77	13.79
HORVU5Hr1G065450.20	Barley	nucleus	14.66	10.73
HORVU7Hr1G032420.3	Barley	nucleus	13.49	9.56

Protein Annotations

EnsemblPlants:HORVU5Hr1G011780.1	EnsemblPlantsGene:HORVU5Hr1G011780	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	PANTHER:PTHR12565
PANTHER:PTHR12565:SF194	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0002966128	UniProt:M0YQ16	MapMan:15.5.32	MapMan:26.1.1.4	:	:

Description

No Description!

Coordinates

chrchr5H:+:31836549..31850872

Molecular Weight (calculated)

37142.8 Da

IEP (calculated)

5.848

GRAVY (calculated)

-0.544

Length

341 amino acids

Sequence
(BLAST)

001: MNQQFVPADW SGNMGDALPP LSGEDGGLVE LLRCSGHVVM QSQAVRELEA TPWFQYPIDD SLEEKDLFSE IFGRMPADGA GTPWKEEDQE RGAADAVTAL
101: RSVLMPPPLL LTDKAGLHGH GPPVSEAGES SVVTMAFGRP CGGSNEAQTP HVSDAAGDDR VLLPLSSKEA RDARSYHSAS ATLTTSSAWS RPSGASKRKQ
201: CDGAESPGEV MQHDVESESA NVTCETAQKP ATAKRRRAAQ VHNLSERRRR DRINEKMRAL QELVPHCNKT DKASMLDEAI EYLKSLQLQL QVMWAMGGRM
301: APAPVMFPAG AHQYMQRMAT ISSKMPPFRT CVYSSNYPES S

Best Arabidopsis Sequence Match ( AT1G09530.1 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.