Factsheet for HORVU1Hr1G017900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G057630.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46970.1	HORVU6Hr1G057630.1	AT5G61380.1	11828029

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G100400.2	Wheat	nucleus	93.51	91.83
TraesCS1D01G084200.1	Wheat	nucleus	92.49	90.84
TraesCS1A01G083000.1	Wheat	nucleus	92.7	90.14
Zm00001d024783_P001	Maize	nucleus	51.93	50.69
KXG21255	Sorghum	nucleus	53.14	38.08
VIT_07s0005g02510.t01	Wine grape	nucleus	14.6	36.0
Os01t0286100-01	Rice	nucleus	44.62	34.54
KRH69138	Soybean	cytosol, nucleus, vacuole	11.16	30.56
HORVU2Hr1G104040.6	Barley	nucleus	11.16	29.26
HORVU5Hr1G102240.3	Barley	nucleus	19.68	24.49
GSMUA_Achr5P18390_001	Banana	nucleus	29.82	24.26
HORVU5Hr1G011780.1	Barley	nucleus	16.63	24.05
Bra020017.1-P	Field mustard	nucleus	23.53	23.48
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	27.99	23.27
CDY64745	Canola	nucleus	23.33	22.91
CDX94963	Canola	nucleus	23.12	22.89
CDY06358	Canola	nucleus	22.52	22.61
CDY22636	Canola	nucleus	22.52	22.61
Bra031668.1-P	Field mustard	nucleus	22.52	22.56
HORVU2Hr1G060680.1	Barley	nucleus	16.43	22.38
AT1G09530.3	Thale cress	nucleus	23.53	22.14
VIT_14s0060g00260.t01	Wine grape	nucleus	31.44	21.86
KRH33733	Soybean	nucleus	30.43	21.71
KRH33663	Soybean	nucleus	19.47	21.38
CDX80064	Canola	nucleus	17.04	21.0
Bra004489.1-P	Field mustard	nucleus	17.04	21.0
KRG90443	Soybean	nucleus	30.63	20.91
AT2G46970.1	Thale cress	nucleus	17.65	20.91
CDY66254	Canola	nucleus	16.63	20.5
KRG96663	Soybean	nucleus	26.17	20.38
Bra003483.1-P	Field mustard	nucleus	12.58	20.2
CDX67873	Canola	nucleus	12.58	20.2
AT3G62090.2	Thale cress	nucleus	14.81	20.11
PGSC0003DMT400047079	Potato	nucleus	28.19	19.63
KRH68390	Soybean	nucleus	24.75	19.55
CDY65446	Canola	nucleus	12.78	19.03
Solyc01g102300.2.1	Tomato	nucleus	27.59	19.02
HORVU5Hr1G093310.11	Barley	nucleus	21.1	19.01
HORVU6Hr1G088020.4	Barley	nucleus	11.36	18.92
Bra000436.1-P	Field mustard	nucleus	15.42	18.81
CDX83349	Canola	nucleus	15.42	18.81
KRH68348	Soybean	nucleus	19.68	18.76
CDY50911	Canola	nucleus	9.94	18.08
HORVU7Hr1G026560.2	Barley	nucleus	12.37	18.05
KRG96615	Soybean	nucleus	18.66	17.76
HORVU7Hr1G030250.5	Barley	nucleus	12.78	15.95
CDX76616	Canola	extracellular	11.56	15.92
CDY11401	Canola	extracellular	11.36	15.91
HORVU1Hr1G054260.3	Barley	nucleus	14.81	15.73
HORVU6Hr1G085500.3	Barley	nucleus	11.36	15.47
HORVU5Hr1G106310.3	Barley	nucleus	9.33	14.74
Bra007660.1-P	Field mustard	nucleus	11.56	13.51
HORVU7Hr1G032420.3	Barley	nucleus	11.16	11.43
HORVU5Hr1G065450.20	Barley	nucleus	10.55	11.16

Protein Annotations

MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275
GO:GO:0008150	GO:GO:0009791	GO:GO:0040007	GO:GO:0046983	GO:GO:0080113	InterPro:HLH_DNA-bd_sf
EnsemblPlantsGene:HORVU1Hr1G017900	EnsemblPlants:HORVU1Hr1G017900.1	InterPro:IPR011598	InterPro:IPR036638	UniProt:M0YEX8	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002964709
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:61919204..61923094

Molecular Weight (calculated)

53114.0 Da

IEP (calculated)

6.764

GRAVY (calculated)

-0.558

Length

493 amino acids

Sequence
(BLAST)

001: MSEPGNELEE LLWDNGPALR RAASPFPPFS CSAAGTAKPQ ELAKHPAMAQ GHDDDAVPWL QHYPIIGVDD DGGGADTTPI PQEYFSTLFP VFSDLTAAVA
101: SRDAGAPSTS HAAVAVEPLP EPPAPPKQQQ QQPPPRSTGE GVMNFSFFSR PLQRSLPQAS LRTSAAGSKS VESTLLQTNS NRLRSTPLFS EQRTAWLQPP
201: KESPAPRPPA PPVPVRHAAE PAAALPQRLQ PEARAAALPQ RLQPEARAAV LPQRLQSEAR ASEMPPPPAT ATTSSVCSDN GERSQLKRSS HQTLEWSVSQ
301: DDEDLDDEAG GLRRSAARST KRGRTAEVHN MSERRRRDRI NEKMRALQEL IPNCNKIDKA SMLEEAIEYL KTLQLQVQMM STMGTAGMCM PPMLAMQHMQ
401: MPPMAHFHHH HLGAMGFGMG PFDPRLVAAA GAAQFPYQMI PGAPMFGGHA MPAPPPFHQA AGAHMAAGPV TNDAPAAQAE QAPGDHPQVP RTM

Best Arabidopsis Sequence Match ( AT1G09530.1 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.