Factsheet for TraesCS1A01G083000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G227900.2
TraesCS6B01G253900.1
TraesCS6D01G207100.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46970.1	TraesCS6A01G227900.2	AT5G61380.1	11828029
AT2G46970.1	TraesCS6B01G253900.1	AT5G61380.1	11828029
AT2G46970.1	TraesCS6D01G207100.2	AT5G61380.1	11828029

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G100400.2	Wheat	nucleus	93.89	94.82
TraesCS1D01G084200.1	Wheat	nucleus	93.49	94.42
HORVU1Hr1G017900.1	Barley	nucleus	90.14	92.7
Zm00001d024783_P001	Maize	nucleus	49.7	49.9
TraesCS6A01G190600.1	Wheat	nucleus	9.66	37.98
KXG21255	Sorghum	nucleus	51.48	37.94
VIT_07s0005g02510.t01	Wine grape	nucleus	14.2	36.0
Os01t0286100-01	Rice	nucleus	44.38	35.32
KRH69138	Soybean	cytosol, nucleus, vacuole	11.05	31.11
TraesCS2A01G461700.2	Wheat	nucleus	10.85	29.26
TraesCS5A01G049600.1	Wheat	nucleus	17.36	26.19
GSMUA_Achr5P18390_001	Banana	nucleus	30.18	25.25
Bra020017.1-P	Field mustard	nucleus	23.27	23.89
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	27.81	23.78
TraesCS5A01G420200.1	Wheat	nucleus	19.53	23.57
CDY64745	Canola	nucleus	23.08	23.31
TraesCS2A01G253900.2	Wheat	nucleus	16.37	23.18
CDX94963	Canola	nucleus	22.68	23.09
CDY06358	Canola	nucleus	22.29	23.01
CDY22636	Canola	nucleus	22.29	23.01
VIT_14s0060g00260.t01	Wine grape	nucleus	31.95	22.85
Bra031668.1-P	Field mustard	nucleus	22.09	22.76
TraesCS5A01G376500.1	Wheat	nucleus	21.5	22.38
AT1G09530.3	Thale cress	nucleus	23.08	22.33
KRH33733	Soybean	nucleus	29.98	22.0
AT2G46970.1	Thale cress	nucleus	17.95	21.88
KRH33663	Soybean	nucleus	19.13	21.6
CDX80064	Canola	nucleus	16.96	21.5
Bra004489.1-P	Field mustard	nucleus	16.96	21.5
CDY66254	Canola	nucleus	16.77	21.25
AT3G62090.2	Thale cress	nucleus	15.19	21.21
KRG90443	Soybean	nucleus	29.98	21.05
KRG96663	Soybean	nucleus	25.84	20.7
Bra003483.1-P	Field mustard	nucleus	12.43	20.52
CDX67873	Canola	nucleus	12.43	20.52
KRH68390	Soybean	nucleus	24.46	19.87
PGSC0003DMT400047079	Potato	nucleus	27.61	19.77
Solyc01g102300.2.1	Tomato	nucleus	27.42	19.44
CDY65446	Canola	nucleus	12.62	19.34
Bra000436.1-P	Field mustard	nucleus	15.38	19.31
CDX83349	Canola	nucleus	15.38	19.31
KRH68348	Soybean	nucleus	19.53	19.15
TraesCS7A01G126900.1	Wheat	nucleus	12.43	19.03
CDY50911	Canola	nucleus	10.06	18.82
TraesCS6A01G373500.2	Wheat	nucleus	11.24	18.81
KRG96615	Soybean	nucleus	18.74	18.34
CDX76616	Canola	extracellular	12.03	17.04
CDY11401	Canola	extracellular	11.64	16.76
TraesCS5A01G441900.1	Wheat	nucleus	9.27	16.73
TraesCS1A01G212700.1	Wheat	nucleus	14.79	16.48
TraesCS7A01G147500.1	Wheat	nucleus	12.82	16.33
TraesCS6A01G358400.3	Wheat	nucleus	11.64	15.21
TraesCS5A01G225700.1	Wheat	nucleus	13.21	14.63
Bra007660.1-P	Field mustard	nucleus	12.03	14.46
TraesCS7A01G157700.1	Wheat	nucleus	11.24	11.88

Protein Annotations

EnsemblPlants:TraesCS1A01G083000.1	EnsemblPlantsGene:TraesCS1A01G083000	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom	ncoils:Coil
PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	TIGR:cd00083	MapMan:15.5.32	:	:	:

Description

No Description!

Coordinates

chr1A:+:66175277..66177248

Molecular Weight (calculated)

54416.6 Da

IEP (calculated)

6.799

GRAVY (calculated)

-0.531

Length

507 amino acids

Sequence
(BLAST)

001: MSEPGNELDE LLWDNGPALR RAASPFPPFS CSPAGTMKAQ ELAKHPASAT AMAQGHDDDA VPWLQHYPII GVDDGGGGDT APLPQDYFST LFPGFSDLPA
101: AVAGRDAGAP STSHAAVVVP PLPEPPVLPK QQQQQQQQPP PPRSTGEGVM NFSFFSRPLQ RSLPQASVRP SAAGSKSVES TLLQTNRLRS TPLFSEQRTA
201: WLQPPRESPA TVAAPRPLAP PVPVQHAAEP AAALSQRLQP EARAAALPPR LQPEPRAAAL PQRLQSEARA SEMPPPPATA TTSSVCSDNG ERSQLKRSSH
301: QTLEWSVSQD DEDLDDEAGG LRRSAARSTK RGRTAEVHNM SERRRRDRIN EKMRALQELI PNCNKIDKAS MLEEAIEYLK TLQLQVQMMS TMGTAGLCMP
401: PMMAMQHMQM PPMAHFHHHH LGAMGYGMGP FDPRLVAAAG AAQFPYQMMP GAPMFGGHAM PPPPPFHQAA VAGAHMAAGP VSNDAATAAQ AEHEQTPGDH
501: PQVPRAM

Best Arabidopsis Sequence Match ( AT1G09530.1 )
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Arabidopsis Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.