Factsheet for AT1G09530.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22636	Canola	nucleus	79.01	84.32
CDY06358	Canola	nucleus	77.86	83.1
Bra031668.1-P	Field mustard	nucleus	77.67	82.72
CDY64745	Canola	nucleus	78.82	82.27
Bra020017.1-P	Field mustard	nucleus	77.29	81.98
CDX94963	Canola	nucleus	77.1	81.12
VIT_07s0005g02510.t01	Wine grape	nucleus	12.98	34.0
KRG96663	Soybean	nucleus	34.92	28.91
KRH68390	Soybean	nucleus	33.78	28.37
PGSC0003DMT400047079	Potato	nucleus	37.79	27.97
Solyc01g102300.2.1	Tomato	nucleus	36.45	26.71
AT5G67110.1	Thale cress	nucleus	10.69	26.67
Zm00001d024783_P001	Maize	nucleus	23.47	24.36
HORVU1Hr1G017900.1	Barley	nucleus	22.14	23.53
KXG32305	Sorghum	nucleus	26.72	23.18
TraesCS1D01G084200.1	Wheat	nucleus	22.14	23.11
Zm00001d040536_P005	Maize	nucleus	25.0	23.1
GSMUA_Achr1P19000_001	Banana	mitochondrion, nucleus	26.14	23.1
TraesCS1A01G083000.1	Wheat	nucleus	22.33	23.08
AT2G20180.2	Thale cress	nucleus	20.99	23.01
Os05t0139100-01	Rice	nucleus	22.14	22.97
TraesCS1B01G100400.2	Wheat	nucleus	21.95	22.91
AT2G46970.1	Thale cress	nucleus	16.98	21.39
AT4G28815.1	Thale cress	vacuole	12.4	21.17
AT4G28790.1	Thale cress	nucleus	16.6	21.07
Zm00001d008205_P001	Maize	nucleus	25.38	20.85
Os01t0286100-01	Rice	nucleus	25.19	20.72
AT4G36930.1	Thale cress	nucleus	14.69	20.64
AT3G62090.2	Thale cress	nucleus	14.12	20.39
AT4G00050.1	Thale cress	nucleus	15.46	20.3
AT3G59060.2	Thale cress	nucleus	17.18	20.27
AT2G43010.5	Thale cress	extracellular, vacuole	18.13	20.13
AT4G28800.2	Thale cress	nucleus	16.6	19.04
KXG21255	Sorghum	nucleus	24.05	18.31
AT4G28811.1	Thale cress	nucleus	18.89	18.2
AT5G58010.1	Thale cress	nucleus	10.11	17.85
AT2G24260.1	Thale cress	nucleus	11.64	17.43
AT4G30980.2	Thale cress	nucleus, plastid	11.26	16.48
AT4G02590.1	Thale cress	nucleus	8.97	15.16
AT1G03040.3	Thale cress	nucleus	8.59	13.51

Protein Annotations

MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	EntrezGene:837479	ProteinID:AAC33213.1	ProteinID:ABP96435.1
ProteinID:ABP96436.1	ProteinID:ABP96437.1	ProteinID:ABP96438.1	ProteinID:ABP96439.1	ProteinID:ABP96440.1	ProteinID:ABP96441.1
ProteinID:ABP96442.1	ProteinID:ABP96443.1	ProteinID:ABP96444.1	ProteinID:ABP96445.1	ProteinID:ABP96446.1	ProteinID:ABP96447.1
ProteinID:ABP96448.1	ProteinID:ABP96449.1	ProteinID:AEE28457.1	ProteinID:AEE28458.1	EMBL:AF088280	EMBL:AF100166
EMBL:AF251693	EMBL:AK117255	ProteinID:ANM60410.1	ProteinID:ANM60411.1	ProteinID:ANM60412.1	ProteinID:ANM60413.1
ArrayExpress:AT1G09530	EnsemblPlantsGene:AT1G09530	RefSeq:AT1G09530	TAIR:AT1G09530	RefSeq:AT1G09530-TAIR-G	EnsemblPlants:AT1G09530.3
Unigene:At.10926	GO:GO:0000976	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009585	GO:GO:0009605	GO:GO:0009628
GO:GO:0009639	GO:GO:0009704	GO:GO:0009719	GO:GO:0009740	GO:GO:0009791	GO:GO:0009987
GO:GO:0010017	GO:GO:0031539	GO:GO:0042802	GO:GO:0044212	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	RefSeq:NP_001318964.1	RefSeq:NP_001318965.1	RefSeq:NP_001322700.1	RefSeq:NP_001322701.1
RefSeq:NP_172424.1	RefSeq:NP_849626.1	UniProt:O80536	PFAM:PF00010	Symbol:PIF3	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF284	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00000041EB	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]

Coordinates

chr1:+:3075768..3079654

Molecular Weight (calculated)

56993.4 Da

IEP (calculated)

6.518

GRAVY (calculated)

-0.728

Length

524 amino acids

Sequence
(BLAST)

001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.