Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 5
- extracellular 4
- endoplasmic reticulum 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G28800.2 | Thale cress | nucleus | 65.8 | 44.2 |
| CDY35224 | Canola | nucleus | 35.83 | 42.47 |
| CDY06870 | Canola | nucleus | 55.7 | 37.58 |
| CDY06867 | Canola | nucleus | 56.68 | 36.1 |
| AT4G28811.1 | Thale cress | nucleus | 60.91 | 34.38 |
| CDY35220 | Canola | nucleus | 39.41 | 32.61 |
| CDY06865 | Canola | nucleus | 38.11 | 32.59 |
| Bra011061.1-P | Field mustard | nucleus | 53.42 | 31.72 |
| CDY35222 | Canola | nucleus | 58.31 | 31.02 |
| AT2G20180.2 | Thale cress | nucleus | 42.35 | 27.2 |
| AT4G28790.1 | Thale cress | nucleus | 34.2 | 25.42 |
| Os04t0618600-01 | Rice | nucleus | 14.01 | 23.76 |
| TraesCS2D01G461900.1 | Wheat | nucleus | 12.05 | 23.57 |
| Bra011062.1-P | Field mustard | cytosol | 34.85 | 23.36 |
| AT5G67110.1 | Thale cress | nucleus | 14.66 | 21.43 |
| EES11436 | Sorghum | nucleus | 13.03 | 21.28 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 12.38 | 20.21 |
| Solyc04g007430.1.1 | Tomato | nucleus | 12.05 | 20.11 |
| Zm00001d002288_P002 | Maize | nucleus | 14.01 | 20.09 |
| TraesCS2A01G461700.2 | Wheat | nucleus | 12.05 | 19.68 |
| TraesCS2B01G483300.1 | Wheat | nucleus | 12.05 | 19.68 |
| TraesCS2D01G461700.3 | Wheat | nucleus | 12.05 | 19.68 |
| PGSC0003DMT400015377 | Potato | nucleus | 11.73 | 17.73 |
| Zm00001d026317_P003 | Maize | nucleus, plastid | 13.36 | 17.3 |
| AT4G00050.1 | Thale cress | nucleus | 19.87 | 15.29 |
| AT2G43010.5 | Thale cress | extracellular, vacuole | 23.45 | 15.25 |
| AT5G58010.1 | Thale cress | nucleus | 14.66 | 15.15 |
| AT4G36930.1 | Thale cress | nucleus | 18.24 | 15.01 |
| AT3G59060.2 | Thale cress | nucleus | 20.2 | 13.96 |
| AT2G24260.1 | Thale cress | nucleus | 14.33 | 12.57 |
| AT1G09530.3 | Thale cress | nucleus | 21.17 | 12.4 |
| AT4G30980.2 | Thale cress | nucleus, plastid | 14.33 | 12.29 |
| AT3G62090.2 | Thale cress | nucleus | 14.33 | 12.12 |
| AT2G46970.1 | Thale cress | nucleus | 16.29 | 12.02 |
| AT4G02590.1 | Thale cress | nucleus | 11.73 | 11.61 |
| AT1G03040.3 | Thale cress | nucleus | 11.4 | 10.51 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | EntrezGene:5008171 | ProteinID:AEE85548.1 | EMBL:AJ577586 | ArrayExpress:AT4G28815 |
| EnsemblPlantsGene:AT4G28815 | RefSeq:AT4G28815 | TAIR:AT4G28815 | RefSeq:AT4G28815-TAIR-G | EnsemblPlants:AT4G28815.1 | TAIR:AT4G28815.1 |
| Unigene:At.71260 | ProteinID:CAA22971.1 | ProteinID:CAB81469.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| RefSeq:NP_001078463.1 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF145 | UniProt:Q7XHI7 |
| SMART:SM00353 | SUPFAM:SSF47459 | SignalP:SignalP-noTM | UniParc:UPI00001B2F96 | InterPro:bHLH_dom | SEG:seg |
Description
BHLH127Transcription factor bHLH127 [Source:UniProtKB/Swiss-Prot;Acc:Q7XHI7]
Coordinates
chr4:+:14228719..14230380
Molecular Weight (calculated)
34590.8 Da
IEP (calculated)
8.702
GRAVY (calculated)
-0.538
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MMIISSQILL LFGFKLFFET RGEDDIVELL CKIGQTQIPS SDPLPILRGS GSGGREENTP LPPPLPHQNL FIQEDEMSSW PHHPLRQDYL CSELYASTPA
101: PHPQSSVSLA PPPPKPPSSA PYGQIIAPRS APRIQGTEEA RGSTSRKRSR AAEMHNLAER RRREKINERM KTLQQLIPRC NKSTKVSMLE DVIEYVKSLE
201: MQINQFMPHM AMGMNQPPAY IPFPSQAHMA GVGPSYPPPR YPFPNIQTFD PSRVWLQSPQ PNPVSNQPQM NPYGQFVGHH QMQQSLPPPL QVILSQYPLC
301: LFLCSNK
101: PHPQSSVSLA PPPPKPPSSA PYGQIIAPRS APRIQGTEEA RGSTSRKRSR AAEMHNLAER RRREKINERM KTLQQLIPRC NKSTKVSMLE DVIEYVKSLE
201: MQINQFMPHM AMGMNQPPAY IPFPSQAHMA GVGPSYPPPR YPFPNIQTFD PSRVWLQSPQ PNPVSNQPQM NPYGQFVGHH QMQQSLPPPL QVILSQYPLC
301: LFLCSNK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.