Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35220 | Canola | nucleus | 45.58 | 70.89 |
| CDY06867 | Canola | nucleus | 58.93 | 70.54 |
| CDY06870 | Canola | nucleus | 52.51 | 66.59 |
| CDY06865 | Canola | nucleus | 38.3 | 61.56 |
| AT4G28815.1 | Thale cress | vacuole | 31.02 | 58.31 |
| Bra011062.1-P | Field mustard | cytosol | 45.23 | 56.99 |
| CDY35224 | Canola | nucleus | 24.61 | 54.83 |
| AT4G28800.2 | Thale cress | nucleus | 40.03 | 50.55 |
| AT4G28811.1 | Thale cress | nucleus | 42.81 | 45.4 |
| CDY37185 | Canola | mitochondrion | 7.45 | 43.88 |
| AT4G28790.1 | Thale cress | nucleus | 26.34 | 36.8 |
| CDY31989 | Canola | nucleus | 29.29 | 35.5 |
| CDY05725 | Canola | nucleus | 29.29 | 33.33 |
| CDY24734 | Canola | plastid | 7.45 | 30.28 |
| Os04t0618600-01 | Rice | nucleus | 8.67 | 27.62 |
| TraesCS2D01G461900.1 | Wheat | nucleus | 7.11 | 26.11 |
| CDY01438 | Canola | nucleus, plastid | 9.71 | 25.69 |
| CDY12804 | Canola | nucleus, plastid | 9.53 | 25.46 |
| EES11436 | Sorghum | nucleus | 8.15 | 25.0 |
| Zm00001d002288_P002 | Maize | nucleus | 8.84 | 23.83 |
| CDY67566 | Canola | nucleus, plastid | 11.27 | 23.72 |
| CDY00603 | Canola | nucleus, plastid | 11.27 | 23.72 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 7.63 | 23.4 |
| CDY20289 | Canola | nucleus | 8.49 | 23.22 |
| TraesCS2D01G461700.3 | Wheat | nucleus | 7.45 | 22.87 |
| TraesCS2B01G483300.1 | Wheat | nucleus | 7.45 | 22.87 |
| TraesCS2A01G461700.2 | Wheat | nucleus | 7.45 | 22.87 |
| Solyc04g007430.1.1 | Tomato | nucleus | 7.28 | 22.83 |
| CDY30375 | Canola | nucleus | 15.42 | 21.92 |
| CDY14866 | Canola | nucleus | 15.25 | 21.84 |
| CDX83509 | Canola | nucleus | 15.6 | 21.79 |
| CDY29961 | Canola | nucleus | 15.25 | 21.62 |
| CDX70453 | Canola | nucleus | 15.25 | 21.62 |
| CDX91917 | Canola | nucleus | 13.0 | 21.61 |
| CDY65390 | Canola | nucleus | 7.8 | 21.53 |
| CDY42809 | Canola | nucleus | 15.42 | 21.5 |
| CDX83214 | Canola | nucleus | 12.82 | 21.26 |
| PGSC0003DMT400015377 | Potato | nucleus | 7.28 | 20.69 |
| CDX71916 | Canola | nucleus | 15.6 | 20.32 |
| Zm00001d026317_P003 | Maize | nucleus, plastid | 8.32 | 20.25 |
| CDY06026 | Canola | nucleus | 15.42 | 20.14 |
| CDX74328 | Canola | nucleus | 13.0 | 19.38 |
| CDY21498 | Canola | nucleus | 12.65 | 18.86 |
| CDX75629 | Canola | nucleus | 11.27 | 18.79 |
| CDY22448 | Canola | nucleus, plastid | 11.44 | 18.75 |
| CDX69281 | Canola | nucleus, plastid | 11.09 | 18.34 |
| CDY46133 | Canola | nucleus | 6.07 | 18.32 |
| CDY44048 | Canola | nucleus, plastid | 10.57 | 17.89 |
| CDX94963 | Canola | nucleus | 15.08 | 17.47 |
| CDY22636 | Canola | nucleus | 14.56 | 17.11 |
| CDY64745 | Canola | nucleus | 14.73 | 16.93 |
| CDY06358 | Canola | nucleus | 14.38 | 16.9 |
| CDY11836 | Canola | nucleus | 8.32 | 16.78 |
| CDY55014 | Canola | nucleus | 8.32 | 16.61 |
| CDY34780 | Canola | nucleus | 9.71 | 16.57 |
| CDX80064 | Canola | nucleus | 11.44 | 16.5 |
| CDY66254 | Canola | nucleus | 11.44 | 16.5 |
| CDX67873 | Canola | nucleus | 8.67 | 16.29 |
| CDY28232 | Canola | nucleus | 9.19 | 16.21 |
| CDX76819 | Canola | nucleus | 9.53 | 16.18 |
| CDX88653 | Canola | nucleus | 8.32 | 16.0 |
| CDX68710 | Canola | nucleus | 9.01 | 15.9 |
| CDY32733 | Canola | nucleus | 8.32 | 15.89 |
| CDY62262 | Canola | nucleus | 8.32 | 15.89 |
| CDY02785 | Canola | nucleus | 8.15 | 15.88 |
| CDX83349 | Canola | nucleus | 11.09 | 15.84 |
| CDX91293 | Canola | nucleus | 7.97 | 15.44 |
| CDY65446 | Canola | nucleus | 8.84 | 15.41 |
| CDY18011 | Canola | nucleus | 7.97 | 15.13 |
| CDY50911 | Canola | nucleus | 7.11 | 15.13 |
| CDX97278 | Canola | nucleus | 7.8 | 15.05 |
| CDY18143 | Canola | nucleus | 7.8 | 14.71 |
| CDX90930 | Canola | nucleus | 7.8 | 14.52 |
| CDY22062 | Canola | nucleus | 7.63 | 14.47 |
| CDX89919 | Canola | nucleus | 7.8 | 14.47 |
| CDY21898 | Canola | nucleus | 7.45 | 14.29 |
| CDX76616 | Canola | extracellular | 8.49 | 13.69 |
| CDY11401 | Canola | extracellular | 8.32 | 13.64 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 4.16 | 11.82 |
| CDY46132 | Canola | endoplasmic reticulum | 2.6 | 8.52 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078HBT6 | UniProt:A0A078HBT6 | EnsemblPlants:CDY35222 | ProteinID:CDY35222 |
| ProteinID:CDY35222.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00058133001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF145 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE3500 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA01g08090DBnaA01g08090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBT6]
Coordinates
chrLK032348:+:215288..221338
Molecular Weight (calculated)
65166.6 Da
IEP (calculated)
7.844
GRAVY (calculated)
-0.550
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MFAYMYCDTK YVYYIAGNHV FCKRTKHMKS DCHFIKDDIQ AEILRMNHIP QWINYRRNKK NINSKDPTQN TLSSKKDNHF EKKIYEVFRR FFCALGVVSW
101: SFMGKPEEKQ LMFILTNSFW EYLKYYIYMV VHKYKSYNFN MSTLIRDLVC IYISRYESTM GEDDIVELLW KSGHLVRSSQ AQRPSVPPPP PVLRGSGSGG
201: GGSGEESAPL PLPPPLQQPS DDQNLFIRED EMASWLLHHH PLREEDDFHS HLFYSGVVSA VPSTQPQASV SLAPPLPIPP AIHTPTAAER SMGQVIVERR
301: GENFLNFSRL RGNIHTSGGV EVAAAPWVPV VVRDLTQVGS SATPSSSAPE SCLTPATVTG GVAQTFAVPS LSGKAVETET EPAQIKPSTE TTEAADERKR
401: KEREDAAEDT EETGEEARGS TSRKRSRAAE MHNISERRRR EKINEKMKAL QELIPRCNKT DKASMLEDAI EYVKSLQMQI QASMGMMCVN RPPFITFPGT
501: AFPRPPAHMV GLDPSYPAPR YPIPNIQAFD PSRVQQPDPV QNQSQFPGYL NPYSQFVGLQ QMQHPPPPPL QVINTFQ
101: SFMGKPEEKQ LMFILTNSFW EYLKYYIYMV VHKYKSYNFN MSTLIRDLVC IYISRYESTM GEDDIVELLW KSGHLVRSSQ AQRPSVPPPP PVLRGSGSGG
201: GGSGEESAPL PLPPPLQQPS DDQNLFIRED EMASWLLHHH PLREEDDFHS HLFYSGVVSA VPSTQPQASV SLAPPLPIPP AIHTPTAAER SMGQVIVERR
301: GENFLNFSRL RGNIHTSGGV EVAAAPWVPV VVRDLTQVGS SATPSSSAPE SCLTPATVTG GVAQTFAVPS LSGKAVETET EPAQIKPSTE TTEAADERKR
401: KEREDAAEDT EETGEEARGS TSRKRSRAAE MHNISERRRR EKINEKMKAL QELIPRCNKT DKASMLEDAI EYVKSLQMQI QASMGMMCVN RPPFITFPGT
501: AFPRPPAHMV GLDPSYPAPR YPIPNIQAFD PSRVQQPDPV QNQSQFPGYL NPYSQFVGLQ QMQHPPPPPL QVINTFQ
001: MSSWLHHSHP GVTSTPASSV SLPPPPNAPR EDDIVELLWQ SGQVVGTNQT HRQSYDPPPI LRGSGSGRGE ENAPLSQPPP HLHQQNLFIQ EGEMYSWLHH
101: SYRQNYFCSE LLNSTPATHP QSSISLAPRQ TIATRRAENF MNFSWLRGNI FTGGRVDEAG PSFSVVRESM QVGSNTTPPS SSATESCVIP ATEGTASRVS
201: GTLAAHDLGR KGKAVAVEAA GTPSSGVCKA ETEPVQIQPA TESKLKAREE THGTEEARGS TSRKRSRTAE MHNLAERRRR EKINEKMKTL QQLIPRCNKS
301: TKVSTLDDAI EYVKSLQSQI QGMMSPMMNA GNTQQFMPHM AMDMNRPPPF IPFPGTSFPM PAQMAGVGPS YPAPRYPFPN IQTFDPSRVR LPSPQPNPVS
401: NQPQFPAYMN PYSQFAGPHQ LQQPPPPPFQ GQTTSQLSSG QASSSKEPED QENQPTA
101: SYRQNYFCSE LLNSTPATHP QSSISLAPRQ TIATRRAENF MNFSWLRGNI FTGGRVDEAG PSFSVVRESM QVGSNTTPPS SSATESCVIP ATEGTASRVS
201: GTLAAHDLGR KGKAVAVEAA GTPSSGVCKA ETEPVQIQPA TESKLKAREE THGTEEARGS TSRKRSRTAE MHNLAERRRR EKINEKMKTL QQLIPRCNKS
301: TKVSTLDDAI EYVKSLQSQI QGMMSPMMNA GNTQQFMPHM AMDMNRPPPF IPFPGTSFPM PAQMAGVGPS YPAPRYPFPN IQTFDPSRVR LPSPQPNPVS
401: NQPQFPAYMN PYSQFAGPHQ LQQPPPPPFQ GQTTSQLSSG QASSSKEPED QENQPTA
Arabidopsis Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT4G28800]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.