Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003483.1-P | Field mustard | nucleus | 89.12 | 96.09 |
| CDX67873 | Canola | nucleus | 89.12 | 96.09 |
| CDX76616 | Canola | extracellular | 74.92 | 69.27 |
| CDY11401 | Canola | extracellular | 73.41 | 69.03 |
| AT3G62090.2 | Thale cress | nucleus | 70.09 | 63.91 |
| CDX80064 | Canola | nucleus | 47.73 | 39.5 |
| CDY37185 | Canola | mitochondrion | 11.48 | 38.78 |
| CDY66254 | Canola | nucleus | 46.53 | 38.5 |
| CDY50911 | Canola | nucleus | 31.42 | 38.38 |
| CDX83349 | Canola | nucleus | 44.41 | 36.39 |
| VIT_07s0005g02510.t01 | Wine grape | nucleus | 15.41 | 25.5 |
| KRH69138 | Soybean | cytosol, nucleus, vacuole | 12.99 | 23.89 |
| CDY67566 | Canola | nucleus, plastid | 16.62 | 20.07 |
| CDY00603 | Canola | nucleus, plastid | 16.62 | 20.07 |
| CDY01438 | Canola | nucleus, plastid | 12.99 | 19.72 |
| CDY24734 | Canola | plastid | 8.46 | 19.72 |
| CDY65390 | Canola | nucleus | 12.39 | 19.62 |
| CDY12804 | Canola | nucleus, plastid | 12.69 | 19.44 |
| CDY35224 | Canola | nucleus | 14.5 | 18.53 |
| CDX91917 | Canola | nucleus | 19.03 | 18.16 |
| CDY44048 | Canola | nucleus, plastid | 18.13 | 17.6 |
| CDX83214 | Canola | nucleus | 18.43 | 17.53 |
| KRH33663 | Soybean | nucleus | 23.57 | 17.37 |
| CDX75629 | Canola | nucleus | 18.13 | 17.34 |
| CDX74328 | Canola | nucleus | 19.64 | 16.8 |
| CDY22448 | Canola | nucleus, plastid | 17.82 | 16.76 |
| CDY14866 | Canola | nucleus | 20.24 | 16.63 |
| CDX69281 | Canola | nucleus, plastid | 17.52 | 16.62 |
| CDX83509 | Canola | nucleus | 20.24 | 16.22 |
| CDY21498 | Canola | nucleus | 18.73 | 16.02 |
| CDY29961 | Canola | nucleus | 19.64 | 15.97 |
| CDX70453 | Canola | nucleus | 19.64 | 15.97 |
| CDY06026 | Canola | nucleus | 21.15 | 15.84 |
| CDX71916 | Canola | nucleus | 21.15 | 15.8 |
| CDY30375 | Canola | nucleus | 19.34 | 15.76 |
| CDY42809 | Canola | nucleus | 19.03 | 15.22 |
| CDY31989 | Canola | nucleus | 20.54 | 14.29 |
| KRH68348 | Soybean | nucleus | 22.05 | 14.12 |
| CDY64745 | Canola | nucleus | 21.15 | 13.94 |
| Os05t0139100-01 | Rice | nucleus | 21.15 | 13.86 |
| CDY06870 | Canola | nucleus | 19.03 | 13.85 |
| CDY05725 | Canola | nucleus | 21.15 | 13.81 |
| CDY20289 | Canola | nucleus | 8.76 | 13.74 |
| KRG96615 | Soybean | nucleus | 21.45 | 13.71 |
| Zm00001d024783_P001 | Maize | nucleus | 20.85 | 13.66 |
| CDX94963 | Canola | nucleus | 20.54 | 13.65 |
| CDY11836 | Canola | nucleus | 11.78 | 13.64 |
| CDY02785 | Canola | nucleus | 12.08 | 13.51 |
| CDY55014 | Canola | nucleus | 11.78 | 13.49 |
| CDY22636 | Canola | nucleus | 19.94 | 13.44 |
| CDY32733 | Canola | nucleus | 12.08 | 13.24 |
| CDY06358 | Canola | nucleus | 19.64 | 13.24 |
| CDY28232 | Canola | nucleus | 12.99 | 13.15 |
| CDY06865 | Canola | nucleus | 14.2 | 13.09 |
| CDX88653 | Canola | nucleus | 11.78 | 13.0 |
| TraesCS1D01G084200.1 | Wheat | nucleus | 19.64 | 12.95 |
| TraesCS1B01G100400.2 | Wheat | nucleus | 19.64 | 12.95 |
| CDY62262 | Canola | nucleus | 11.78 | 12.91 |
| CDX68710 | Canola | nucleus | 12.69 | 12.84 |
| HORVU1Hr1G017900.1 | Barley | nucleus | 19.03 | 12.78 |
| TraesCS1A01G083000.1 | Wheat | nucleus | 19.34 | 12.62 |
| CDY46132 | Canola | endoplasmic reticulum | 6.65 | 12.5 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 7.55 | 12.32 |
| GSMUA_Achr1P19000_001 | Banana | mitochondrion, nucleus | 22.05 | 12.31 |
| Zm00001d040536_P005 | Maize | nucleus | 20.85 | 12.17 |
| CDY34780 | Canola | nucleus | 12.39 | 12.13 |
| CDX76819 | Canola | nucleus | 12.39 | 12.06 |
| CDY21898 | Canola | nucleus | 10.88 | 11.96 |
| KXG32305 | Sorghum | nucleus | 21.75 | 11.92 |
| CDY35220 | Canola | nucleus | 13.29 | 11.86 |
| CDY22062 | Canola | nucleus | 10.88 | 11.84 |
| CDY18143 | Canola | nucleus | 10.88 | 11.76 |
| CDX91293 | Canola | nucleus | 10.57 | 11.74 |
| CDX97278 | Canola | nucleus | 10.57 | 11.71 |
| CDX89919 | Canola | nucleus | 10.88 | 11.58 |
| PGSC0003DMT400047079 | Potato | nucleus | 24.47 | 11.44 |
| CDY18011 | Canola | nucleus | 10.27 | 11.18 |
| Os01t0286100-01 | Rice | nucleus | 21.45 | 11.15 |
| Zm00001d008205_P001 | Maize | nucleus | 21.45 | 11.13 |
| Solyc01g102300.2.1 | Tomato | nucleus | 23.26 | 10.77 |
| CDX90930 | Canola | nucleus | 9.97 | 10.65 |
| CDY06867 | Canola | nucleus | 15.11 | 10.37 |
| KXG21255 | Sorghum | nucleus | 21.45 | 10.32 |
| CDY46133 | Canola | nucleus | 5.74 | 9.95 |
| CDY35222 | Canola | nucleus | 15.41 | 8.84 |
Protein Annotations
| MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:A0A078JI67 | UniProt:A0A078JI67 | EnsemblPlants:CDY65446 | ProteinID:CDY65446 |
| ProteinID:CDY65446.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00046613001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EC0563 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g42980DBnaC06g42980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JI67]
Coordinates
chrLK034792:+:15867..17291
Molecular Weight (calculated)
37293.2 Da
IEP (calculated)
5.864
GRAVY (calculated)
-0.640
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MMFVLTKLIY CSCRLTDQEY MELVFENGQF LAKSQRSKAF SLENQRTKSI VDLYEDEYNE DFKKSIIHGA DKKLQSLKAS SSKRIVVDYE NRKDNEFIPP
101: DEQSVVAERS VELGFDSTDF TEDSEGSTYI SSSVDDESDD PRPRVPARTR KSFVKRRRIN SNELYNSSEK KQRSDINKKM RKLQNLLPNS GKDDNESTLD
201: EAINYMTTLQ LQVQMMTMSN RFVAPAMMLP LGPHYSQMGL PTCMQMGLPQ FLPSPVLGSG GNSADMLRFL NHPTGLITPM QNSALFTPMG NYFPQSVPPS
301: CAAFPNQIQN STSLSNLDDA RTDGGSLSGK K
101: DEQSVVAERS VELGFDSTDF TEDSEGSTYI SSSVDDESDD PRPRVPARTR KSFVKRRRIN SNELYNSSEK KQRSDINKKM RKLQNLLPNS GKDDNESTLD
201: EAINYMTTLQ LQVQMMTMSN RFVAPAMMLP LGPHYSQMGL PTCMQMGLPQ FLPSPVLGSG GNSADMLRFL NHPTGLITPM QNSALFTPMG NYFPQSVPPS
301: CAAFPNQIQN STSLSNLDDA RTDGGSLSGK K
001: MMFLPTDYCC RLSDQEYMEL VFENGQILAK GQRSNVSLHN QRTKSIMDLY EAEYNEDFMK SIIHGGGGAI TNLGDTQVVP QSHVAAAHET NMLESNKHVD
101: DSETLKASSS KRMMVDYHNR KKIKFIPPDE QSVVADRSFK LGFDTSSVGF TEDSEGSMYL SSSLDDESDD ARPQVPARTR KALVKRKRNA EAYNSPERNQ
201: RNDINKKMRT LQNLLPNSHK DDNESMLDEA INYMTNLQLQ VQMMTMGNRF VTPSMMMPLG PNYSQMGLAM GVGMQMGEQQ FLPAHVLGAG LPGINDSADM
301: LRFLNHPGLM PMQNSAPFIP TENCSPQSVP PSCAAFPNQI PNPNSLSNLD GATLHKKSRK TNR
101: DSETLKASSS KRMMVDYHNR KKIKFIPPDE QSVVADRSFK LGFDTSSVGF TEDSEGSMYL SSSLDDESDD ARPQVPARTR KALVKRKRNA EAYNSPERNQ
201: RNDINKKMRT LQNLLPNSHK DDNESMLDEA INYMTNLQLQ VQMMTMGNRF VTPSMMMPLG PNYSQMGLAM GVGMQMGEQQ FLPAHVLGAG LPGINDSADM
301: LRFLNHPGLM PMQNSAPFIP TENCSPQSVP PSCAAFPNQI PNPNSLSNLD GATLHKKSRK TNR
Arabidopsis Description
PIF6PIL2 [Source:UniProtKB/TrEMBL;Acc:A0A178VFI3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.