Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31989 | Canola | nucleus | 85.01 | 90.55 |
| AT2G20180.2 | Thale cress | nucleus | 67.65 | 71.76 |
| KRH71636 | Soybean | golgi, plasma membrane, vacuole | 17.16 | 56.86 |
| CDY37185 | Canola | mitochondrion | 9.07 | 46.94 |
| CDY06870 | Canola | nucleus | 37.87 | 42.2 |
| CDY06865 | Canola | nucleus | 29.39 | 41.5 |
| VIT_07s0005g05100.t01 | Wine grape | mitochondrion, nucleus | 37.28 | 40.91 |
| Solyc09g063010.2.1 | Tomato | nucleus | 43.79 | 39.86 |
| KRH67519 | Soybean | nucleus | 39.05 | 39.44 |
| GSMUA_Achr1P16830_001 | Banana | extracellular | 19.72 | 38.91 |
| CDY06867 | Canola | nucleus | 36.88 | 38.8 |
| KRH19683 | Soybean | nucleus | 38.46 | 38.31 |
| KRH32290 | Soybean | nucleus | 36.88 | 38.09 |
| PGSC0003DMT400048756 | Potato | nucleus | 43.39 | 38.06 |
| CDY35220 | Canola | nucleus | 27.61 | 37.74 |
| CDY35224 | Canola | nucleus | 18.93 | 37.07 |
| Solyc06g008030.2.1 | Tomato | nucleus | 36.49 | 36.13 |
| PGSC0003DMT400038134 | Potato | nucleus | 35.7 | 35.15 |
| CDY24734 | Canola | plastid | 9.47 | 33.8 |
| CDY00603 | Canola | nucleus, plastid | 16.17 | 29.93 |
| CDY67566 | Canola | nucleus, plastid | 16.17 | 29.93 |
| CDY01438 | Canola | nucleus, plastid | 12.62 | 29.36 |
| CDY35222 | Canola | nucleus | 33.33 | 29.29 |
| CDY12804 | Canola | nucleus, plastid | 12.43 | 29.17 |
| CDY14866 | Canola | nucleus | 22.88 | 28.78 |
| CDY30375 | Canola | nucleus | 22.88 | 28.57 |
| CDY29961 | Canola | nucleus | 22.88 | 28.5 |
| CDX70453 | Canola | nucleus | 22.88 | 28.5 |
| CDX83509 | Canola | nucleus | 22.68 | 27.84 |
| CDY42809 | Canola | nucleus | 22.68 | 27.78 |
| CDX91917 | Canola | nucleus | 18.54 | 27.09 |
| CDY65390 | Canola | nucleus | 11.05 | 26.79 |
| CDX83214 | Canola | nucleus | 17.95 | 26.15 |
| CDX74328 | Canola | nucleus | 18.93 | 24.81 |
| CDY06026 | Canola | nucleus | 21.5 | 24.66 |
| CDX69281 | Canola | nucleus, plastid | 16.96 | 24.64 |
| CDY44048 | Canola | nucleus, plastid | 16.57 | 24.63 |
| CDX71916 | Canola | nucleus | 21.5 | 24.61 |
| CDY21498 | Canola | nucleus | 18.54 | 24.29 |
| CDX75629 | Canola | nucleus | 16.57 | 24.28 |
| CDY22448 | Canola | nucleus, plastid | 16.57 | 23.86 |
| CDX80064 | Canola | nucleus | 18.74 | 23.75 |
| CDY20289 | Canola | nucleus | 9.86 | 23.7 |
| CDY66254 | Canola | nucleus | 18.54 | 23.5 |
| CDX94963 | Canola | nucleus | 23.08 | 23.49 |
| CDY64745 | Canola | nucleus | 22.88 | 23.11 |
| CDY22636 | Canola | nucleus | 22.29 | 23.01 |
| CDX83349 | Canola | nucleus | 18.15 | 22.77 |
| CDY06358 | Canola | nucleus | 21.7 | 22.4 |
| CDX67873 | Canola | nucleus | 13.21 | 21.82 |
| CDY65446 | Canola | nucleus | 13.81 | 21.15 |
| CDY11836 | Canola | nucleus | 11.83 | 20.98 |
| CDY55014 | Canola | nucleus | 11.83 | 20.76 |
| CDY50911 | Canola | nucleus | 11.05 | 20.66 |
| CDX68710 | Canola | nucleus | 13.21 | 20.49 |
| CDY28232 | Canola | nucleus | 13.21 | 20.49 |
| CDX88653 | Canola | nucleus | 11.83 | 20.0 |
| CDY02785 | Canola | nucleus | 11.64 | 19.93 |
| CDY62262 | Canola | nucleus | 11.83 | 19.87 |
| CDY32733 | Canola | nucleus | 11.64 | 19.54 |
| CDY11401 | Canola | extracellular | 13.41 | 19.32 |
| CDX76616 | Canola | extracellular | 13.61 | 19.27 |
| CDY34780 | Canola | nucleus | 12.62 | 18.93 |
| CDX76819 | Canola | nucleus | 12.43 | 18.53 |
| CDX91293 | Canola | nucleus | 10.85 | 18.46 |
| CDY18011 | Canola | nucleus | 11.05 | 18.42 |
| CDY46133 | Canola | nucleus | 6.9 | 18.32 |
| CDX90930 | Canola | nucleus | 10.85 | 17.74 |
| CDX97278 | Canola | nucleus | 10.45 | 17.73 |
| CDY21898 | Canola | nucleus | 10.45 | 17.61 |
| CDY22062 | Canola | nucleus | 10.45 | 17.43 |
| CDX89919 | Canola | nucleus | 10.26 | 16.72 |
| CDY18143 | Canola | nucleus | 10.06 | 16.67 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 6.51 | 16.26 |
| CDY46132 | Canola | endoplasmic reticulum | 4.34 | 12.5 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | GO:A0A078EUK0 | EnsemblPlants:CDY05725 | ProteinID:CDY05725 |
| ProteinID:CDY05725.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00120761001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE1802 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g00780D
Coordinates
chrLK031964:-:284608..287521
Molecular Weight (calculated)
55697.4 Da
IEP (calculated)
7.376
GRAVY (calculated)
-0.848
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHHRHHFVP DFETDDDYVN ANTNSSSSNL PRKPIIGEEE DGDLMELLWH NGQVVLQNQR PNTKKQPLSS SAAVKLHNGA PPPPLDHNLF IQEDEMSSWL
101: HYPLRDDDFC SDLFFPAAPP PVPSTVRPPE PSSMRPPAPS PVRPPAPSSV KPAVRNFMNF SRLRGDFTGG NGRGESGPSI AKSTVRESAK VNPSATPASS
201: AAREPDLTRR TDGADSRGAG DLGSKSAVDG GGAYTVGHNR KGKAVVTTER TSENLGASSS VASKSEIEPL ETIVDERKRK EREEVGSTEC RNEEAKQGRG
301: SSSTKRSRAA EVHNLSERKR RDRINERMKA LQELIPCCNK SDKASMLDEA IEYMKSLQLQ IQMMSMGCGM MPMMYTGMQQ YMPHMAMGMG MGMGVEMGMN
401: RPPPPPPPFM PFPNMLASQR PLPPQTRMGG YPAVQASDPS RVYGPNQQFD PNSSQAQFSG YMDPFQQFRS LYPSQPPQFQ NQAASYPSSS RVSSSKESED
501: HGNQTTS
101: HYPLRDDDFC SDLFFPAAPP PVPSTVRPPE PSSMRPPAPS PVRPPAPSSV KPAVRNFMNF SRLRGDFTGG NGRGESGPSI AKSTVRESAK VNPSATPASS
201: AAREPDLTRR TDGADSRGAG DLGSKSAVDG GGAYTVGHNR KGKAVVTTER TSENLGASSS VASKSEIEPL ETIVDERKRK EREEVGSTEC RNEEAKQGRG
301: SSSTKRSRAA EVHNLSERKR RDRINERMKA LQELIPCCNK SDKASMLDEA IEYMKSLQLQ IQMMSMGCGM MPMMYTGMQQ YMPHMAMGMG MGMGVEMGMN
401: RPPPPPPPFM PFPNMLASQR PLPPQTRMGG YPAVQASDPS RVYGPNQQFD PNSSQAQFSG YMDPFQQFRS LYPSQPPQFQ NQAASYPSSS RVSSSKESED
501: HGNQTTS
001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
Arabidopsis Description
PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.