Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g063010.2.1 | Tomato | nucleus | 89.62 | 93.0 |
| KRH71636 | Soybean | golgi, plasma membrane, vacuole | 17.3 | 65.36 |
| PGSC0003DMT400038134 | Potato | nucleus | 52.25 | 58.64 |
| VIT_07s0005g05100.t01 | Wine grape | mitochondrion, nucleus | 45.16 | 56.49 |
| KRH67519 | Soybean | nucleus | 47.92 | 55.18 |
| KRH19683 | Soybean | nucleus | 46.89 | 53.24 |
| KRH32290 | Soybean | nucleus | 44.64 | 52.55 |
| AT2G20180.2 | Thale cress | nucleus | 39.79 | 48.12 |
| CDY31989 | Canola | nucleus | 37.02 | 44.96 |
| CDY05725 | Canola | nucleus | 38.06 | 43.39 |
| PGSC0003DMT400041156 | Potato | nucleus | 25.09 | 28.05 |
| PGSC0003DMT400015377 | Potato | nucleus | 9.69 | 27.59 |
| PGSC0003DMT400020534 | Potato | nucleus | 13.67 | 25.16 |
| PGSC0003DMT400066807 | Potato | nucleus | 19.38 | 24.14 |
| PGSC0003DMT400010253 | Potato | nucleus | 15.22 | 23.4 |
| PGSC0003DMT400063117 | Potato | nucleus | 16.78 | 22.2 |
| PGSC0003DMT400047079 | Potato | nucleus | 26.64 | 21.75 |
| PGSC0003DMT400083164 | Potato | nucleus | 14.88 | 20.67 |
| PGSC0003DMT400034840 | Potato | nucleus | 10.38 | 20.27 |
| PGSC0003DMT400015596 | Potato | nucleus | 10.21 | 19.47 |
| PGSC0003DMT400020244 | Potato | nucleus | 11.94 | 18.06 |
| PGSC0003DMT400028917 | Potato | nucleus | 13.15 | 17.12 |
| PGSC0003DMT400049768 | Potato | nucleus | 8.82 | 16.89 |
Protein Annotations
| EntrezGene:102585610 | MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 |
| UniProt:M1BMV1 | PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400018950 | PGSC:PGSC0003DMG400018950 | EnsemblPlants:PGSC0003DMT400048756 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00029531F3 | RefSeq:XP_006350296.1 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
Phytochrome-interacting factor [Source:PGSC_GENE;Acc:PGSC0003DMG400018950]
Coordinates
chr9:-:45450532..45460120
Molecular Weight (calculated)
62947.3 Da
IEP (calculated)
6.888
GRAVY (calculated)
-0.706
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHSVPDFDM DDDYSLPASS GLTRTKKSAM AEEEIMELLW QNGQVVMQSQ NQRSLKKSHI GNGSGGGGDA VIPSDQAVGR EIRHVEETTP HHLFMQEDEM
101: ASWLHYPLDD PSFERDLYSD LLYPTPTSTL TTATLPRDNR TSTLEIRPPP PQPSPAAPIG TAPRPPIPPS RRSVTENSNR FQNFGHFSRL PKARLEPGQA
201: NLSKSLRDSA VVDSNVTPIT GQESRVSHVP DNVVPVPSGN VGCSTINGST GTATTSTAIR EPTTTCDISM TSSPGGSGNS VSASAEPPAP SHKAAPTATA
301: AAADDRKRKG REKDDEGQNE DAEFESPDTK KQARGSTSTK RSRAAEVHNL SERRRRDRIN EKMKALQELI PRCNKTDKAS MLDEAIEYLK SLQLQVQMMS
401: MGCGMVPMMY PGMQPYMPPM GMGMGIGMGM EIGMNRQMVP YPPLLQGAAM QNAAAAAQMG PRFPIPPFHL PPVPVPDPSR MQASSQPDPM LNSLVAHNSN
501: QPRLPTFNDP YQQFFGLQQT QVALPQNQAV EQPSNNKSSS KKEVGNPGNH QSGKITIIVY NICHNVTVLK QQTGEREN
101: ASWLHYPLDD PSFERDLYSD LLYPTPTSTL TTATLPRDNR TSTLEIRPPP PQPSPAAPIG TAPRPPIPPS RRSVTENSNR FQNFGHFSRL PKARLEPGQA
201: NLSKSLRDSA VVDSNVTPIT GQESRVSHVP DNVVPVPSGN VGCSTINGST GTATTSTAIR EPTTTCDISM TSSPGGSGNS VSASAEPPAP SHKAAPTATA
301: AAADDRKRKG REKDDEGQNE DAEFESPDTK KQARGSTSTK RSRAAEVHNL SERRRRDRIN EKMKALQELI PRCNKTDKAS MLDEAIEYLK SLQLQVQMMS
401: MGCGMVPMMY PGMQPYMPPM GMGMGIGMGM EIGMNRQMVP YPPLLQGAAM QNAAAAAQMG PRFPIPPFHL PPVPVPDPSR MQASSQPDPM LNSLVAHNSN
501: QPRLPTFNDP YQQFFGLQQT QVALPQNQAV EQPSNNKSSS KKEVGNPGNH QSGKITIIVY NICHNVTVLK QQTGEREN
001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
Arabidopsis Description
PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.