Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g069600.1.1 | Tomato | nucleus | 79.81 | 80.19 |
| PGSC0003DMT400063117 | Potato | nucleus | 52.88 | 50.34 |
| VIT_17s0000g06930.t01 | Wine grape | nucleus | 46.63 | 45.86 |
| KRH54630 | Soybean | nucleus | 37.5 | 38.81 |
| PGSC0003DMT400066807 | Potato | nucleus | 29.09 | 26.08 |
| PGSC0003DMT400015377 | Potato | nucleus | 9.38 | 19.21 |
| PGSC0003DMT400020534 | Potato | nucleus | 14.42 | 19.11 |
| PGSC0003DMT400010253 | Potato | nucleus | 14.66 | 16.22 |
| PGSC0003DMT400041156 | Potato | nucleus | 19.95 | 16.05 |
| PGSC0003DMT400048756 | Potato | nucleus | 20.67 | 14.88 |
| PGSC0003DMT400038134 | Potato | nucleus | 18.27 | 14.76 |
| PGSC0003DMT400015596 | Potato | nucleus | 9.62 | 13.2 |
| PGSC0003DMT400047079 | Potato | nucleus | 20.91 | 12.29 |
| PGSC0003DMT400034840 | Potato | nucleus | 8.65 | 12.16 |
| PGSC0003DMT400020244 | Potato | nucleus | 10.34 | 11.26 |
| PGSC0003DMT400049768 | Potato | nucleus | 7.93 | 10.93 |
| PGSC0003DMT400028917 | Potato | nucleus | 11.3 | 10.59 |
Protein Annotations
| EntrezGene:107061956 | MapMan:15.5.32 | Gene3D:4.10.280.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1D6M4 |
| PFAM:PF00010 | EnsemblPlantsGene:PGSC0003DMG400033087 | PGSC:PGSC0003DMG400033087 | EnsemblPlants:PGSC0003DMT400083164 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF285 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI000296B7AC | RefSeq:XP_015167498.1 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400033087]
Coordinates
chr6:+:51466651..51468759
Molecular Weight (calculated)
46810.4 Da
IEP (calculated)
8.800
GRAVY (calculated)
-0.780
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHHTWNFSH QKQVVEKEVE ENRYPRSHVH NQQNQVDPMS NKCEVAELTW ENGQVAMHRL GSNLSNEQTK HTWGKAGDTL ESIVHQATLQ KQNHSYIMGS
101: DGQNQANINR DKNASYGAQQ TRGVLKRMRS SDSDPQLYIG GISLEHLNAR ASARDNDITM VTWPCNEDSA CHGGSENKEE LERETKSSNP SKRSRRAAVH
201: NQSERRRRVR INEKMKALQK LVPNASKTDK ASMLEEVIKY LKQLQAQIHM ISYAKNMEQQ MLMMMQPHIQ MPLLARMSDL SLGMGTAGMI NNMTANLARA
301: PYQSPLIYPT SIATPSCHPF MSPAFGMPPA IHTQPAAQVA NYGDAPSTTV TKAAATAPNI ATTSFYPFND PYNAFLAQSM KMELNNEMLA QYMQQANQSM
401: QSKFNQENVN IQGEKE
101: DGQNQANINR DKNASYGAQQ TRGVLKRMRS SDSDPQLYIG GISLEHLNAR ASARDNDITM VTWPCNEDSA CHGGSENKEE LERETKSSNP SKRSRRAAVH
201: NQSERRRRVR INEKMKALQK LVPNASKTDK ASMLEEVIKY LKQLQAQIHM ISYAKNMEQQ MLMMMQPHIQ MPLLARMSDL SLGMGTAGMI NNMTANLARA
301: PYQSPLIYPT SIATPSCHPF MSPAFGMPPA IHTQPAAQVA NYGDAPSTTV TKAAATAPNI ATTSFYPFND PYNAFLAQSM KMELNNEMLA QYMQQANQSM
401: QSKFNQENVN IQGEKE
001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
Arabidopsis Description
UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.