Factsheet for PGSC0003DMT400020244

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g010170.1.1	Tomato	nucleus	98.17	96.9
PGSC0003DMT400028917	Potato	nucleus	71.73	61.71
VIT_11s0037g00040.t01	Wine grape	nucleus	70.42	53.37
KRH12909	Soybean	nucleus	63.61	51.16
KRH37912	Soybean	nucleus	63.61	49.59
GSMUA_Achr4P01910_001	Banana	nucleus	53.66	45.66
PGSC0003DMT400034840	Potato	nucleus	33.51	43.24
PGSC0003DMT400015596	Potato	nucleus	34.29	43.23
GSMUA_Achr3P04630_001	Banana	nucleus	54.45	42.62
PGSC0003DMT400049768	Potato	nucleus	33.51	42.38
PGSC0003DMT400015377	Potato	nucleus	12.04	22.66
PGSC0003DMT400010253	Potato	nucleus	15.18	15.43
PGSC0003DMT400020534	Potato	nucleus	12.04	14.65
PGSC0003DMT400041156	Potato	nucleus	17.02	12.57
PGSC0003DMT400038134	Potato	nucleus	16.49	12.23
PGSC0003DMT400063117	Potato	nucleus	13.87	12.13
PGSC0003DMT400066807	Potato	nucleus	14.66	12.07
PGSC0003DMT400048756	Potato	nucleus	18.06	11.94
PGSC0003DMT400083164	Potato	nucleus	11.26	10.34
PGSC0003DMT400047079	Potato	nucleus	18.85	10.17

Protein Annotations

EntrezGene:102592581	MapMan:15.5.32	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1AD59	PFAM:PF00010
EnsemblPlantsGene:PGSC0003DMG400007827	PGSC:PGSC0003DMG400007827	EnsemblPlants:PGSC0003DMT400020244	PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF28
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002952BAB	RefSeq:XP_006350094.1	InterPro:bHLH_dom	SEG:seg

Description

Roothairless1/slippery [Source:PGSC_GENE;Acc:PGSC0003DMG400007827]

Coordinates

chr12:+:2204012..2210835

Molecular Weight (calculated)

39564.0 Da

IEP (calculated)

6.704

GRAVY (calculated)

-0.472

Length

382 amino acids

Sequence
(BLAST)

001: MQAMNSFQST GENGASSGEH ISHSHFDPSS SHDDFLQQIL SSVPSSSPWP EISGDGHPYN FDDHQSTLLA SKLRQHQING GSSAAAAAKA LMLQQQLLLS
101: RGIAGNGGSG MNGDQNDDGL NPGNDISVQA LYNGFAGSLG QTSNQSQHFH HSQAQSFGAP AASLTMNQTP AASGSAGGAQ PKQQKVRARR GQATDPHSIA
201: ERLRRERIAE RMKSLQELVP NANKTDKASM LDEIIDYVRF LQLQVKVLSM SRLGGAAAVA PLVADRSSEG GGDCVQGNGG RGGSNGTTSS ANNDSSMTMT
301: EHQVAKLMEE DMGSAMQYLQ GKGLCLMPIS LATAISTSTC HSMKPNNPLL LGGGSAINGG GPSSPTLSAS TVQSATMGNG GT

Best Arabidopsis Sequence Match ( AT2G24260.1 )
(BLAST)

001: MMNSSLLTPS SSSSSHIQTP STTFDHEDFL DQIFSSAPWP SVVDDAHPLP SDGFHGHDVD SRNQPIMMMP LNDGSSVHAL YNGFSVAGSL PNFQIPQGSG
101: GGLMNQQGQT QTQTQPQASA STATGGTVAA PPQSRTKIRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNGNKTDKA SMLDEIIDYV KFLQLQVKVL
201: SMSRLGGAAS VSSQISEAGG SHGNASSAMV GGSQTAGNSN DSVTMTEHQV AKLMEEDMGS AMQYLQGKGL CLMPISLATA ISTATCHSRN PLIPGAVADV
301: GGPSPPNLSG MTIQSTSTKM GSGNGKLNGN GVTERSSSIA VKEAVSVSKA

Arabidopsis Description

BHLH66Transcription factor bHLH66 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.