Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g007430.1.1 | Tomato | nucleus | 78.82 | 86.96 |
| TraesCS2D01G461900.1 | Wheat | nucleus | 15.76 | 20.38 |
| Os04t0618600-01 | Rice | nucleus | 17.73 | 19.89 |
| EES11436 | Sorghum | nucleus | 17.73 | 19.15 |
| HORVU2Hr1G104040.6 | Barley | nucleus | 17.24 | 18.62 |
| TraesCS2D01G461700.3 | Wheat | nucleus | 16.75 | 18.09 |
| TraesCS2B01G483300.1 | Wheat | nucleus | 16.75 | 18.09 |
| TraesCS2A01G461700.2 | Wheat | nucleus | 16.75 | 18.09 |
| CDY35224 | Canola | nucleus | 21.18 | 16.6 |
| Zm00001d002288_P002 | Maize | nucleus | 17.24 | 16.36 |
| Zm00001d026317_P003 | Maize | nucleus, plastid | 16.75 | 14.35 |
| PGSC0003DMT400034840 | Potato | nucleus | 19.21 | 13.18 |
| PGSC0003DMT400020534 | Potato | nucleus | 20.2 | 13.06 |
| PGSC0003DMT400049768 | Potato | nucleus | 19.21 | 12.91 |
| PGSC0003DMT400015596 | Potato | nucleus | 19.21 | 12.87 |
| PGSC0003DMT400020244 | Potato | nucleus | 22.66 | 12.04 |
| PGSC0003DMT400010253 | Potato | nucleus | 22.17 | 11.97 |
| AT4G28815.1 | Thale cress | vacuole | 17.73 | 11.73 |
| CDY06865 | Canola | nucleus | 19.21 | 10.86 |
| PGSC0003DMT400028917 | Potato | nucleus | 23.15 | 10.59 |
| CDY06870 | Canola | nucleus | 23.65 | 10.55 |
| PGSC0003DMT400063117 | Potato | nucleus | 22.17 | 10.3 |
| PGSC0003DMT400048756 | Potato | nucleus | 27.59 | 9.69 |
| AT4G28790.1 | Thale cress | nucleus | 19.7 | 9.69 |
| AT4G28800.2 | Thale cress | nucleus | 21.67 | 9.63 |
| PGSC0003DMT400083164 | Potato | nucleus | 19.21 | 9.38 |
| CDY06867 | Canola | nucleus | 22.17 | 9.34 |
| PGSC0003DMT400066807 | Potato | nucleus | 21.18 | 9.27 |
| CDY35220 | Canola | nucleus | 16.26 | 8.89 |
| PGSC0003DMT400038134 | Potato | nucleus | 22.17 | 8.74 |
| PGSC0003DMT400047079 | Potato | nucleus | 28.57 | 8.19 |
| PGSC0003DMT400041156 | Potato | nucleus | 20.2 | 7.93 |
| AT4G28811.1 | Thale cress | nucleus | 21.18 | 7.9 |
| Bra011061.1-P | Field mustard | nucleus | 19.21 | 7.54 |
| CDY35222 | Canola | nucleus | 20.69 | 7.28 |
| Bra011062.1-P | Field mustard | cytosol | 14.29 | 6.33 |
Protein Annotations
| EntrezGene:102588413 | MapMan:15.5.32 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | UniProt:M1A5X8 | PFAM:PF00010 |
| EnsemblPlantsGene:PGSC0003DMG400005998 | PGSC:PGSC0003DMG400005998 | EnsemblPlants:PGSC0003DMT400015377 | PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF306 |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI00029565AA | RefSeq:XP_015170292.1 | InterPro:bHLH_dom | SEG:seg |
Description
Helix-loop-helix DNA-binding domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005998]
Coordinates
chr4:+:1794779..1799095
Molecular Weight (calculated)
22929.9 Da
IEP (calculated)
10.045
GRAVY (calculated)
-0.279
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MLKGEVYLLA RFGGCYVAEI ETNNGIGITS RRNEDGFHQY TKTSCVEMHK MNERRRRYRI AKKMKVLEEL IPNCNKSNRA SVLDQAIQHI QALQHQVQVM
101: SMDRIRASTL VAAGRNQIMQ STLHFNPYVP IMPRIGAIGY FFGFGKSFTY SNMYCSNFSP MLSTGGQFPF LPLSDANNLL HPVPIMEAFT RGSASVAPPE
201: KRA
101: SMDRIRASTL VAAGRNQIMQ STLHFNPYVP IMPRIGAIGY FFGFGKSFTY SNMYCSNFSP MLSTGGQFPF LPLSDANNLL HPVPIMEAFT RGSASVAPPE
201: KRA
001: MPLFELFRLT KAKLESAQDR NPSPPVDEVV ELVWENGQIS TQSQSSRSRN IPPPQANSSR AREIGNGSKT TMVDEIPMSV PSLMTGLSQD DDFVPWLNHH
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
101: PSLDGYCSDF LRDVSSPVTV NEQESDMAVN QTAFPLFQRR KDGNESAPAA SSSQYNGFQS HSLYGSDRAR DLPSQQTNPD RFTQTQEPLI TSNKPSLVNF
201: SHFLRPATFA KTTNNNLHDT KEKSPQSPPN VFQTRVLGAK DSEDKVLNES VASATPKDNQ KACLISEDSC RKDQESEKAV VCSSVGSGNS LDGPSESPSL
301: SLKRKHSNIQ DIDCHSEDVE EESGDGRKEA GPSRTGLGSK RSRSAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK SLQLQVQIMS
401: MASGYYLPPA VMFPPGMGHY PAAAAAMAMG MGMPYAMGLP DLSRGGSSVN HGPQFQVSGM QQQPVAMGIP RVSGGGIFAG SSTIGNGSTR DLSGSKDQTT
501: TNNNSNLKPI KRKQGSSDQF CGSS
Arabidopsis Description
PIF3Transcription factor PIF3 [Source:UniProtKB/Swiss-Prot;Acc:O80536]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.