Factsheet for PGSC0003DMT400010253

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010344
PGSC0003DMT400048857

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36930.1	PGSC0003DMT400010344	AT3G50330.1	17855426
AT4G36930.1	PGSC0003DMT400048857	AT3G50330.1	17855426
AT4G36930.1	PGSC0003DMT400010344	AT5G67060.1	17855426
AT4G36930.1	PGSC0003DMT400048857	AT5G67060.1	17855426

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093280.2.1	Tomato	nucleus	87.5	87.04
GSMUA_Achr9P11300_001	Banana	nucleus	12.23	73.02
TraesCS6A01G190600.1	Wheat	nucleus	17.82	51.94
CDX75629	Canola	nucleus	36.97	40.17
Bra011740.1-P	Field mustard	nucleus, plastid	37.23	39.55
CDX69281	Canola	nucleus, plastid	36.7	39.54
Bra010591.1-P	Field mustard	nucleus, plastid	35.64	39.3
CDY44048	Canola	nucleus, plastid	35.64	39.3
CDY22448	Canola	nucleus, plastid	36.7	39.2
AT4G36930.1	Thale cress	nucleus	38.03	38.34
Os06t0164400-01	Rice	cytosol, mitochondrion, nucleus	18.09	34.52
OQU75890	Sorghum	nucleus	25.8	33.33
PGSC0003DMT400020534	Potato	nucleus	27.66	33.12
GSMUA_Achr10P...	Banana	plastid	28.72	31.49
GSMUA_Achr8P15670_001	Banana	nucleus	28.99	30.88
Os02t0805250-00	Rice	nucleus	22.87	30.71
TraesCS7A01G126900.1	Wheat	nucleus	26.86	30.51
TraesCS7B01G026300.1	Wheat	nucleus	27.13	30.09
HORVU7Hr1G026560.2	Barley	nucleus	26.6	29.59
Zm00001d045212_P001	Maize	nucleus	26.6	29.5
TraesCS7D01G124700.1	Wheat	nucleus	26.33	29.29
KXG31309	Sorghum	nucleus	22.61	29.11
HORVU6Hr1G088020.4	Barley	nucleus	21.54	27.36
TraesCS6D01G357700.1	Wheat	nucleus	21.01	26.6
TraesCS6A01G373500.2	Wheat	nucleus	21.28	26.4
TraesCS6B01G411300.1	Wheat	nucleus	21.01	26.07
Zm00001d018416_P001	Maize	mitochondrion	22.07	25.15
PGSC0003DMT400015377	Potato	nucleus	11.97	22.17
PGSC0003DMT400038134	Potato	nucleus	22.34	16.31
PGSC0003DMT400049768	Potato	nucleus	13.03	16.23
PGSC0003DMT400034840	Potato	nucleus	12.77	16.22
GSMUA_Achr7P20810_001	Banana	nucleus	25.53	16.03
PGSC0003DMT400066807	Potato	nucleus	19.41	15.73
PGSC0003DMT400063117	Potato	nucleus	18.09	15.56
PGSC0003DMT400015596	Potato	nucleus	12.5	15.51
PGSC0003DMT400048756	Potato	nucleus	23.4	15.22
PGSC0003DMT400020244	Potato	nucleus	15.43	15.18
PGSC0003DMT400083164	Potato	nucleus	16.22	14.66
PGSC0003DMT400041156	Potato	nucleus	19.41	14.12
PGSC0003DMT400028917	Potato	nucleus	16.49	13.96
PGSC0003DMT400047079	Potato	nucleus	24.47	12.99

Protein Annotations

EntrezGene:102578586	MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0000003	GO:GO:0003674
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0007275	GO:GO:0007623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009409	GO:GO:0009628	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0010114	GO:GO:0010154	GO:GO:0010187	GO:GO:0046983
GO:GO:0048440	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M0ZXR3	PFAM:PF00010
EnsemblPlantsGene:PGSC0003DMG400004011	PGSC:PGSC0003DMG400004011	EnsemblPlants:PGSC0003DMT400010253	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF284
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000295885D	RefSeq:XP_006339939.1	InterPro:bHLH_dom	SEG:seg

Description

ALCATRAZ/SPATULA [Source:PGSC_GENE;Acc:PGSC0003DMG400004011]

Coordinates

chr2:+:43637626..43640029

Molecular Weight (calculated)

41288.1 Da

IEP (calculated)

4.809

GRAVY (calculated)

-0.674

Length

376 amino acids

Sequence
(BLAST)

001: MANNNVYHNS ANIASFSLTD PDPDPDPEPD DISVFLRHIL LPSSSSSSSN LMALKGNEMQ YSSPSPHLMP NNNQQGDLSS MMNSSAGGIF SSSYGAYNGA
101: TNVSSSSVGT MDNDPDEYEC ESEDGTEDLG AEASVQPPSR NTSKRSRAAE VHNLSEKRRR SRINEKMKAL QKLIPNSNKT DKASMLDEAI EYLKQLQLQV
201: QMLTMRNGLN MYPLGLPRML QQNQLSQQKI GLCEGNGFTN AKVAGNLQVN QDASLSAIFN PTENCTETKL TPLVTMSNVN HSDGAFEPES SMNTHLDPFQ
301: LSRSTSKEIW REDGLPMYGM NERTTKTASV GANVAFSVPI DTDASNLKRN TREACLLRYQ FGAMNETNLD YTRALP

Best Arabidopsis Sequence Match ( AT4G36930.1 )
(BLAST)

001: MISQREEREE KKQRVMGDKK LISSSSSSSV YDTRINHHLH HPPSSSDEIS QFLRHIFDRS SPLPSYYSPA TTTTTASLIG VHGSGDPHAD NSRSLVSHHP
101: PSDSVLMSKR VGDFSEVLIG GGSGSAAACF GFSGGGNNNN VQGNSSGTRV SSSSVGASGN ETDEYDCESE EGGEAVVDEA PSSKSGPSSR SSSKRCRAAE
201: VHNLSEKRRR SRINEKMKAL QSLIPNSNKT DKASMLDEAI EYLKQLQLQV QMLTMRNGIN LHPLCLPGTT LHPLQLSQIR PPEATNDPLL NHTNQFASTS
301: NAPEMINTVA SSYALEPSIR SHFGPFPLLT SPVEMSREGG LTHPRLNIGH SNANITGEQA LFDGQPDLKD RIT

Arabidopsis Description

SPTSPT [Source:UniProtKB/TrEMBL;Acc:A0A178UVX7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.