Factsheet for PGSC0003DMT400034840

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g005350.2.1	Tomato	nucleus	91.55	91.55
PGSC0003DMT400015596	Potato	nucleus	78.38	76.57
Os07t0182200-01	Rice	cytosol	33.11	72.06
VIT_05s0020g04620.t01	Wine grape	nucleus	63.18	59.74
OQU88567	Sorghum	nucleus	52.7	56.32
GSMUA_Achr5P03100_001	Banana	nucleus	52.03	56.2
GSMUA_Achr4P21070_001	Banana	nucleus	55.41	54.67
Zm00001d018967_P001	Maize	nucleus	52.36	54.39
Zm00001d013073_P002	Maize	nucleus	52.36	54.39
KXG37359	Sorghum	nucleus	52.03	54.23
PGSC0003DMT400049768	Potato	nucleus	54.05	52.98
TraesCS5D01G449200.1	Wheat	nucleus	50.0	52.67
TraesCS5B01G445900.1	Wheat	nucleus	50.0	52.67
Os03t0797600-01	Rice	nucleus	52.03	52.38
TraesCS5A01G441900.1	Wheat	nucleus	49.32	51.96
HORVU5Hr1G106310.3	Barley	nucleus	49.66	47.12
GSMUA_Achr9P25560_001	Banana	nucleus	56.08	47.03
PGSC0003DMT400020244	Potato	nucleus	43.24	33.51
PGSC0003DMT400028917	Potato	nucleus	45.27	30.18
PGSC0003DMT400015377	Potato	nucleus	13.18	19.21
PGSC0003DMT400010253	Potato	nucleus	16.22	12.77
PGSC0003DMT400020534	Potato	nucleus	13.18	12.42
PGSC0003DMT400038134	Potato	nucleus	19.26	11.07
PGSC0003DMT400041156	Potato	nucleus	19.26	11.03
PGSC0003DMT400063117	Potato	nucleus	16.22	10.98
PGSC0003DMT400048756	Potato	nucleus	20.27	10.38
PGSC0003DMT400066807	Potato	nucleus	14.86	9.48
PGSC0003DMT400083164	Potato	nucleus	12.16	8.65
PGSC0003DMT400047079	Potato	nucleus	20.27	8.47

Protein Annotations

EntrezGene:102596583	MapMan:15.5.32	Gene3D:4.10.280.10	ProteinID:AFW90608	ProteinID:AFW90608.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
EMBL:JX576252	UniProt:M1B1D0	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400013393	PGSC:PGSC0003DMG400013393	EnsemblPlants:PGSC0003DMT400034840
PFscan:PS50888	PANTHER:PTHR16223	PANTHER:PTHR16223:SF15	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002968CAA
RefSeq:XP_006356051.2	RefSeq:XP_015168141.1	InterPro:bHLH_dom	SEG:seg	:	:

Description

Basic helix-loop-helix protein BHLH3 [Source:PGSC_GENE;Acc:PGSC0003DMG400013393]

Coordinates

chr3:+:394471..399860

Molecular Weight (calculated)

32478.5 Da

IEP (calculated)

5.156

GRAVY (calculated)

-0.339

Length

296 amino acids

Sequence
(BLAST)

001: MANNPPEVYA ADDFLQQILA IPSYASLPVT DISAGTSSEN SASGISQLQH QRLFPLGLSL DNGFADANNT GGFQVKTERE AMDMGNLYPG LEHLQSHAVC
101: LSVPQVHQVQ PFQGHPTSST TVTIPHQPAI RPMVRARRGQ ATDPHSIAER LRRERISERI KALQELVPSC NKTDRAAMLD EILDYVKFLR LQVKVLSMSR
201: LGGASAVAQL VADIPLQSVE GDSCESRSNQ HVWEKWSDSE TEQEVAKLME EDVGTAMQYL QSKSLCIMPV SLAALIYPTQ QTDNQSMVKP EPTAPS

Best Arabidopsis Sequence Match ( AT4G02590.2 )
(BLAST)

001: MASNNPHDNL SDQTPSDDFF EQILGLPNFS ASSAAGLSGV DGGLGGGAPP MMLQLGSGEE GSHMGGLGGS GPTGFHNQMF PLGLSLDQGK GPGFLRPEGG
101: HGSGKRFSDD VVDNRCSSMK PVFHGQPMQQ PPPSAPHQPT SIRPRVRARR GQATDPHSIA ERLRRERIAE RIRALQELVP TVNKTDRAAM IDEIVDYVKF
201: LRLQVKVLSM SRLGGAGAVA PLVTDMPLSS SVEDETGEGG RTPQPAWEKW SNDGTERQVA KLMEENVGAA MQLLQSKALC MMPISLAMAI YHSQPPDTSS
301: VVKPENNPPQ

Arabidopsis Description

UNE12Transcription factor UNE12 [Source:UniProtKB/Swiss-Prot;Acc:O22768]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.