Factsheet for PGSC0003DMT400063117

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115540.1.1	Tomato	nucleus	95.19	94.76
VIT_17s0000g06930.t01	Wine grape	nucleus	52.4	54.14
PGSC0003DMT400083164	Potato	nucleus	50.34	52.88
KRH54630	Soybean	nucleus	38.9	42.29
PGSC0003DMT400066807	Potato	nucleus	32.49	30.6
PGSC0003DMT400015377	Potato	nucleus	10.3	22.17
PGSC0003DMT400020534	Potato	nucleus	14.65	20.38
PGSC0003DMT400010253	Potato	nucleus	15.56	18.09
PGSC0003DMT400041156	Potato	nucleus	21.28	17.99
PGSC0003DMT400038134	Potato	nucleus	21.05	17.86
PGSC0003DMT400048756	Potato	nucleus	22.2	16.78
PGSC0003DMT400015596	Potato	nucleus	11.44	16.5
PGSC0003DMT400034840	Potato	nucleus	10.98	16.22
PGSC0003DMT400049768	Potato	nucleus	10.53	15.23
PGSC0003DMT400020244	Potato	nucleus	12.13	13.87
PGSC0003DMT400047079	Potato	nucleus	21.97	13.56
PGSC0003DMT400028917	Potato	nucleus	13.5	13.29

Protein Annotations

EntrezGene:102592550	MapMan:15.5.32	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M1CA37
PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400024554	PGSC:PGSC0003DMG400024554	EnsemblPlants:PGSC0003DMT400063117	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF285	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002965E43	RefSeq:XP_006345215.2	InterPro:bHLH_dom
SEG:seg	:	:	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024554]

Coordinates

chr3:+:55395567..55398080

Molecular Weight (calculated)

48177.7 Da

IEP (calculated)

7.297

GRAVY (calculated)

-0.688

Length

437 amino acids

Sequence
(BLAST)

001: MSHCTVPTWN PRYQRQEHVV EAGEANKYPH VHNQQIQINH LLPMSSKCEE VAELTWEKGQ LGIHGLGGIL SISQAKQTLG RTGDTLESIV HQATHHAKNQ
101: TSIHQNYDQN EDQYLKTGVL YSGGKWGESS QQMAPPQATV LAKKRMRPSE SDPQYGGAED HEYAEGSACA SASATFYREN DTTMVTWPSF DESSRSMKSK
201: TTCDEDSACH VGGSENKEEE HETKRSNSSR RSRAAAVHNQ SERRRRDRIN QRMKALQRLV PNASKTDKAS MLDEVIDYLK QLQAQVQLMS STPRNMTPQM
301: MMPLGMHQHI QMSLLARMGV GVGLGMGMGM FDMTALARAA AAAASATTHP NQMTTAPFNI PFTPPGAFAL PATPANSVSP ATTSTTTNST PFTNPAFLPQ
401: SMDMEFFNNM AALYRQQLAN QSTQIIGSKL NQGDQTE

Best Arabidopsis Sequence Match ( AT4G00050.1 )
(BLAST)

001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK

Arabidopsis Description

UNE10Transcription factor UNE10 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ38]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.