Factsheet for PGSC0003DMT400038134

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038134
PGSC0003DMT400041156
PGSC0003DMT400047079
PGSC0003DMT400048756

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20180.2	PGSC0003DMT400038134	AT2G20180.2	21928113
AT2G20180.2	PGSC0003DMT400048756	AT2G20180.2	21928113
AT2G20180.2	PGSC0003DMT400041156	AT3G59060.2	21928113
AT2G20180.2	PGSC0003DMT400047079	AT3G62090.2	21928113

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008030.2.1	Tomato	nucleus	84.08	84.57
PGSC0003DMT400048756	Potato	nucleus	58.64	52.25
AT2G20180.2	Thale cress	nucleus	36.89	39.75
GSMUA_Achr1P16830_001	Banana	extracellular	19.42	38.91
CDY31989	Canola	nucleus	34.17	36.97
CDY05725	Canola	nucleus	35.15	35.7
PGSC0003DMT400041156	Potato	nucleus	25.24	25.15
PGSC0003DMT400020534	Potato	nucleus	13.98	22.93
PGSC0003DMT400010253	Potato	nucleus	16.31	22.34
PGSC0003DMT400015377	Potato	nucleus	8.74	22.17
PGSC0003DMT400066807	Potato	nucleus	19.61	21.77
PGSC0003DMT400063117	Potato	nucleus	17.86	21.05
PGSC0003DMT400047079	Potato	nucleus	27.18	19.77
PGSC0003DMT400034840	Potato	nucleus	11.07	19.26
PGSC0003DMT400015596	Potato	nucleus	11.26	19.14
PGSC0003DMT400083164	Potato	nucleus	14.76	18.27
PGSC0003DMT400049768	Potato	nucleus	9.9	16.89
PGSC0003DMT400020244	Potato	nucleus	12.23	16.49
PGSC0003DMT400028917	Potato	nucleus	12.62	14.64

Protein Annotations

EntrezGene:102583507	MapMan:15.5.32	MapMan:26.1.1.4	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M1B6D6	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400014705	PGSC:PGSC0003DMG400014705	EnsemblPlants:PGSC0003DMT400038134	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF194	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000296621F	RefSeq:XP_006364548.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

Phytochrome-interacting factor [Source:PGSC_GENE;Acc:PGSC0003DMG400014705]

Coordinates

chr6:+:2038519..2047215

Molecular Weight (calculated)

56411.3 Da

IEP (calculated)

4.912

GRAVY (calculated)

-0.582

Length

515 amino acids

Sequence
(BLAST)

001: MNYCVVPDFK MDDDYSDIAS AIFNISKKST IADEEIMELV WQNGRVIMQS QNQRSVRKSN LFSEQSAVEE TVAASAPLYM QEDEMNSWLQ SPLDDSSFDD
101: FLNTTPSCAA VTSAAAPPGE IGTSTVEIRP PLAPPSSRPV RCTEGELPHR LQNFGHFSRL PEGAILRNGN TSSSRHSVRA STIVDSNETP VVAGPEYMIS
201: RVSDDVPLAS AVNVRGVEMT AMATTSGDRE VTTACELTLT ASTSGSGGSV STRSDLPQPS YKEADAAAED RKRKGRESDD NDGQSEDVEY EFADARKQVR
301: SSTSAKKSRA AEVHNLSERK RRDRINEKMK ALQELIPHCN KSDKASMLDE AIEYLKSLQL QVQMMATGCS LVPVMYPGIP QYMTTMGMNM GMGMSMEMGR
401: NLPMVSYPPL MPDPAMRNAA AAAQMTPQYP LPAYHMPPFP APDPSRIPVG NQADPPRLYS HVGHNINQPR LANFSDPYHQ YFGLQQAQPM LLQNQGVEQP
501: SSSKPEESAG NHQSG

Best Arabidopsis Sequence Match ( AT2G20180.4 )
(BLAST)

001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG

Arabidopsis Description

PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.