Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05725 | Canola | nucleus | 90.55 | 85.01 |
| AT2G20180.2 | Thale cress | nucleus | 71.43 | 71.13 |
| KRH71636 | Soybean | golgi, plasma membrane, vacuole | 18.7 | 58.17 |
| CDY37185 | Canola | mitochondrion | 9.66 | 46.94 |
| CDY06870 | Canola | nucleus | 40.34 | 42.2 |
| CDY06865 | Canola | nucleus | 30.67 | 40.67 |
| KRH67519 | Soybean | nucleus | 41.39 | 39.24 |
| VIT_07s0005g05100.t01 | Wine grape | mitochondrion, nucleus | 38.03 | 39.18 |
| Solyc09g063010.2.1 | Tomato | nucleus | 45.38 | 38.78 |
| KRH32290 | Soybean | nucleus | 39.5 | 38.29 |
| KRH19683 | Soybean | nucleus | 40.76 | 38.11 |
| CDY35220 | Canola | nucleus | 29.62 | 38.01 |
| CDY06867 | Canola | nucleus | 38.45 | 37.97 |
| GSMUA_Achr1P16830_001 | Banana | extracellular | 20.38 | 37.74 |
| CDY35224 | Canola | nucleus | 20.38 | 37.45 |
| PGSC0003DMT400048756 | Potato | nucleus | 44.96 | 37.02 |
| Solyc06g008030.2.1 | Tomato | nucleus | 37.82 | 35.16 |
| PGSC0003DMT400038134 | Potato | nucleus | 36.97 | 34.17 |
| CDY24734 | Canola | plastid | 10.08 | 33.8 |
| CDY12804 | Canola | nucleus, plastid | 13.66 | 30.09 |
| CDY01438 | Canola | nucleus, plastid | 13.66 | 29.82 |
| CDY35222 | Canola | nucleus | 35.5 | 29.29 |
| CDY00603 | Canola | nucleus, plastid | 16.81 | 29.2 |
| CDY67566 | Canola | nucleus, plastid | 16.81 | 29.2 |
| CDY30375 | Canola | nucleus | 23.95 | 28.08 |
| CDY29961 | Canola | nucleus | 23.95 | 28.01 |
| CDX70453 | Canola | nucleus | 23.95 | 28.01 |
| CDY14866 | Canola | nucleus | 23.53 | 27.79 |
| CDX83509 | Canola | nucleus | 23.53 | 27.12 |
| CDY42809 | Canola | nucleus | 23.32 | 26.81 |
| CDX91917 | Canola | nucleus | 19.12 | 26.22 |
| CDY65390 | Canola | nucleus | 11.13 | 25.36 |
| CDX83214 | Canola | nucleus | 18.49 | 25.29 |
| CDY44048 | Canola | nucleus, plastid | 17.65 | 24.63 |
| CDX69281 | Canola | nucleus, plastid | 17.86 | 24.36 |
| CDY06026 | Canola | nucleus | 22.48 | 24.21 |
| CDX71916 | Canola | nucleus | 22.48 | 24.15 |
| CDX80064 | Canola | nucleus | 20.17 | 24.0 |
| CDX75629 | Canola | nucleus | 17.44 | 23.99 |
| CDY22448 | Canola | nucleus, plastid | 17.65 | 23.86 |
| CDX74328 | Canola | nucleus | 19.33 | 23.77 |
| CDY66254 | Canola | nucleus | 19.75 | 23.5 |
| CDY21498 | Canola | nucleus | 18.91 | 23.26 |
| CDY20289 | Canola | nucleus | 10.29 | 23.22 |
| CDX83349 | Canola | nucleus | 18.91 | 22.28 |
| CDY22636 | Canola | nucleus | 22.9 | 22.2 |
| CDY06358 | Canola | nucleus | 22.69 | 22.0 |
| CDY64745 | Canola | nucleus | 22.9 | 21.71 |
| CDX94963 | Canola | nucleus | 22.69 | 21.69 |
| CDX67873 | Canola | nucleus | 13.66 | 21.17 |
| CDY65446 | Canola | nucleus | 14.29 | 20.54 |
| CDY55014 | Canola | nucleus | 12.39 | 20.42 |
| CDY11836 | Canola | nucleus | 12.18 | 20.28 |
| CDY02785 | Canola | nucleus | 12.18 | 19.59 |
| CDX68710 | Canola | nucleus | 13.45 | 19.57 |
| CDY28232 | Canola | nucleus | 13.45 | 19.57 |
| CDY50911 | Canola | nucleus | 11.13 | 19.56 |
| CDY62262 | Canola | nucleus | 12.39 | 19.54 |
| CDX88653 | Canola | nucleus | 12.18 | 19.33 |
| CDY32733 | Canola | nucleus | 12.18 | 19.21 |
| CDY11401 | Canola | extracellular | 13.87 | 18.75 |
| CDX91293 | Canola | nucleus | 11.55 | 18.46 |
| CDX76616 | Canola | extracellular | 13.87 | 18.44 |
| CDY18011 | Canola | nucleus | 11.76 | 18.42 |
| CDY34780 | Canola | nucleus | 12.82 | 18.05 |
| CDX90930 | Canola | nucleus | 11.55 | 17.74 |
| CDX97278 | Canola | nucleus | 11.13 | 17.73 |
| CDX76819 | Canola | nucleus | 12.61 | 17.65 |
| CDY21898 | Canola | nucleus | 11.13 | 17.61 |
| CDY22062 | Canola | nucleus | 11.13 | 17.43 |
| CDY46133 | Canola | nucleus | 6.93 | 17.28 |
| CDX89919 | Canola | nucleus | 10.92 | 16.72 |
| CDY18143 | Canola | nucleus | 10.71 | 16.67 |
| CDY20290 | Canola | endoplasmic reticulum, extracellular | 6.93 | 16.26 |
| CDY46132 | Canola | endoplasmic reticulum | 4.62 | 12.5 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.1.4 | Gene3D:4.10.280.10 | GO:A0A078H3J9 | UniProt:A0A078H3J9 | EnsemblPlants:CDY31989 |
| ProteinID:CDY31989 | ProteinID:CDY31989.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00050802001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF194 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE59CF |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaA07g00060DBnaA07g00060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3J9]
Coordinates
chrLK032283:+:436629..439022
Molecular Weight (calculated)
52764.6 Da
IEP (calculated)
6.800
GRAVY (calculated)
-0.900
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MNHHHHFVPD FETDDDYVNA NTNSSSSNLP RKPILGEEED GDLMELLWHN GQVVLQNQRP NTKKQPPSSS SSSAPPPPLD HNLFIQEDEM SSWLHYPLRD
101: DDFCSDLFFP AAPSSERHTS NQVTSTRPPV PSTPPAPSSV KPPVRNFMNF SRLRGDFTGR GESGPSTVRE SAKVNPSATP ASSAARESDL GSRSAVDGGG
201: AYTVGDNRKG KAVVTTEPAR ENQGTSSSVA SKSEIETIVD ERKRKEREAI DETECRNEVS PLARLVEAKQ GRGSSSTKRS RAAEVHNLSE RKRRDRINER
301: MKALQELIPR CNKSDKASML DEAIEYMKSL QLQIQMMSMG CGMMPMIYTG MQQYMPHMAM GMGMEMGMNR PPPPPPPFMP FPNMLASQRP LPPQTRMGGY
401: PPVQASDPSR VYGSNQQFDP NSSQAQFSAY MDPFQQFRSL HPSQPPQFQN QAASYPSSSR VSSSKESEDH GNQTTS
101: DDFCSDLFFP AAPSSERHTS NQVTSTRPPV PSTPPAPSSV KPPVRNFMNF SRLRGDFTGR GESGPSTVRE SAKVNPSATP ASSAARESDL GSRSAVDGGG
201: AYTVGDNRKG KAVVTTEPAR ENQGTSSSVA SKSEIETIVD ERKRKEREAI DETECRNEVS PLARLVEAKQ GRGSSSTKRS RAAEVHNLSE RKRRDRINER
301: MKALQELIPR CNKSDKASML DEAIEYMKSL QLQIQMMSMG CGMMPMIYTG MQQYMPHMAM GMGMEMGMNR PPPPPPPFMP FPNMLASQRP LPPQTRMGGY
401: PPVQASDPSR VYGSNQQFDP NSSQAQFSAY MDPFQQFRSL HPSQPPQFQN QAASYPSSSR VSSSKESEDH GNQTTS
001: MHHFVPDFDT DDDYVNNHNS SLNHLPRKSI TTMGEDDDLM ELLWQNGQVV VQNQRLHTKK PSSSPPKLLP SMDPQQQPSS DQNLFIQEDE MTSWLHYPLR
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
101: DDDFCSDLLF SAAPTATATA TVSQVTAARP PVSSTNESRP PVRNFMNFSR LRGDFNNGRG GESGPLLSKA VVRESTQVSP SATPSAAASE SGLTRRTDGT
201: DSSAVAGGGA YNRKGKAVAM TAPAIEITGT SSSVVSKSEI EPEKTNVDDR KRKEREATTT DETESRSEET KQARVSTTST KRSRAAEVHN LSERKRRDRI
301: NERMKALQEL IPRCNKSDKA SMLDEAIEYM KSLQLQIQMM SMGCGMMPMM YPGMQQYMPH MAMGMGMNQP IPPPSFMPFP NMLAAQRPLP TQTHMAGSGP
401: QYPVHASDPS RVFVPNQQYD PTSGQPQYPA GYTDPYQQFR GLHPTQPPQF QNQATSYPSS SRVSSSKESE DHGNHTTG
Arabidopsis Description
PIF1Transcription factor PIF1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZM7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.