Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89982 | Canola | nucleus | 92.11 | 95.19 |
| Bra033315.1-P | Field mustard | nucleus | 71.33 | 85.04 |
| CDY32456 | Canola | nucleus | 65.95 | 67.4 |
| CDY55316 | Canola | nucleus | 66.31 | 66.07 |
| AT1G02340.1 | Thale cress | nucleus | 65.95 | 63.01 |
Protein Annotations
| EnsemblPlants:CDY15232 | EnsemblPlantsGene:GSBRNA2T00085428001 | Gene3D:4.10.280.10 | GO:A0A078FQU0 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF284 | PFscan:PS50888 | ProteinID:CDY15232 | ProteinID:CDY15232.1 | SEG:seg |
| SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EE4FE7 | UniProt:A0A078FQU0 | MapMan:15.5.32 | : |
Description
BnaC05g01110DBnaC05g01110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQU0]
Coordinates
chrLK032052:-:590665..592968
Molecular Weight (calculated)
31782.7 Da
IEP (calculated)
8.116
GRAVY (calculated)
-0.711
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MELGWNNDVG SLAAKDRGIS ERARSDKERL ITGLKSSYGY VDHDQTDIQF QTVPEIHREE ENSEKDLTLA VPDEHSETGD HHDHQIYDFS DNQYYLRNKH
101: VKPKRSRIEI FSDDESEGFT REVPTVTSKR FKRRRNDMLS NKMRDKKKSN KMRKLQKLLP NCHKEDTVSV LDKAIEYMKD LQLQLQVMSI MGMNPYFAQA
201: TLNFGMHNHL VTAMAIAQGI NLVNQTTSSP LIPASNSPLP PFSNLSIPRT SNQSLFPTTA LPASSTQCLC GLVPFPKFP
101: VKPKRSRIEI FSDDESEGFT REVPTVTSKR FKRRRNDMLS NKMRDKKKSN KMRKLQKLLP NCHKEDTVSV LDKAIEYMKD LQLQLQVMSI MGMNPYFAQA
201: TLNFGMHNHL VTAMAIAQGI NLVNQTTSSP LIPASNSPLP PFSNLSIPRT SNQSLFPTTA LPASSTQCLC GLVPFPKFP
001: MELGWRNDVG SLAVKDQGMM SERARSDEDR LINGLKWGYG YFDHDQTDNY LQIVPEIHKE VENAKEDLLV VVPDEHSETD DHHHIKDFSE RSDHRFYLRN
101: KHENPKKRRI QVLSSDDESE EFTREVPSVT RKGSKRRRRD EKMSNKMRKL QQLVPNCHKT DKVSVLDKTI EYMKNLQLQL QMMSTVGVNP YFLPATLGFG
201: MHNHMLTAMA SAHGLNPANH MMPSPLIPAL NWPLPPFTNI SFPHSSSQSL FLTTSSPASS PQSLHGLVPY FPSFLDFSSH AMRRL
101: KHENPKKRRI QVLSSDDESE EFTREVPSVT RKGSKRRRRD EKMSNKMRKL QQLVPNCHKT DKVSVLDKTI EYMKNLQLQL QMMSTVGVNP YFLPATLGFG
201: MHNHMLTAMA SAHGLNPANH MMPSPLIPAL NWPLPPFTNI SFPHSSSQSL FLTTSSPASS PQSLHGLVPY FPSFLDFSSH AMRRL
Arabidopsis Description
HFR1Transcription factor HFR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FE22]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.